Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n01
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   1.1  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   2.6  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   4.5  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    23   4.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   5.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    23   5.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    23   7.8  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    23   7.8  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  FYSEFKNVLQVSFPETDGFSFQDIVF 114
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 162 NRQFQFCYPTSRVRCNENNILKR 94
           N  ++FC   SR   ++N +LKR
Sbjct: 776 NEIYEFCGTHSRAEVHKNEVLKR 798


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 155  NFSFAIQLLEYVVMKTIS*KENPSV-SGKETCKTFLNSL 42
            NF+ +I LLE  ++K++   + P V   K+ C T   S+
Sbjct: 3614 NFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSI 3652


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 73  FPETDGFSFQDIVFITTYSRSWIAK 147
           F   + F F  +VFI  +   W AK
Sbjct: 41  FTYKEAFVFNTVVFIIVFLTGWAAK 65


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 49  FKNVLQVSFPETDGFSFQDIVF 114
           FKN L +S   T   SF+ +VF
Sbjct: 261 FKNTLGISIEVTKDMSFRTLVF 282


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 8   HSNYVTQWTISIVNLKMSYKF 70
           H NY+TQ +  I  L   Y F
Sbjct: 90  HYNYITQLSEDITQLSWGYNF 110


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 63   TSFFSRNRWVFFSRYCFHYNV 125
            +SFF  + +V F R CFH  +
Sbjct: 2531 SSFFLTDDFVRFIRVCFHSRI 2551


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 146  FAIQLLEYVVMKTIS*KENPSV 81
            + +  LEYV  KT S  E P +
Sbjct: 1165 YCVHTLEYVFQKTSSANERPDI 1186


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 176 LSSYKTGNFSFAIQLLEYVVMKTIS 102
           + + K GN   AI+ LEY++ +  S
Sbjct: 266 IKAKKDGNLENAIEFLEYIMPEVAS 290


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 112 KQYLEKKTHLFREKKLVRH 56
           K YL K TH++R  + + H
Sbjct: 176 KSYLAKYTHIYRYYQTIYH 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,684
Number of Sequences: 5004
Number of extensions: 14883
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)