Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5n01
(250 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 1.3
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 26 4.1
U41033-1|AAA82372.1| 317|Caenorhabditis elegans Hypothetical pr... 26 4.1
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 26 4.1
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 26 4.1
AF106583-11|AAD03138.2| 129|Caenorhabditis elegans Hypothetical... 26 4.1
Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z30423-11|CAD27184.1| 237|Caenorhabditis elegans Hypothetical p... 25 9.4
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 25 9.4
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 25 9.4
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 25 9.4
>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
protein C45G3.1 protein.
Length = 1186
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 22 NAMDDFYSEFKNVLQVSFPETDGFSFQDIVFITTYSRSWI 141
N +DD +SE L T +F + FI TY +S+I
Sbjct: 304 NCLDDVFSELTKELLTGSSATFKKAFAKVGFIPTYRQSFI 343
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 141 YPTSRVRCNENNILKRKPICFGK 73
Y T C E N+L R +C+ K
Sbjct: 374 YDTCTTMCEETNVLTRAEVCWDK 396
>U41033-1|AAA82372.1| 317|Caenorhabditis elegans Hypothetical
protein K09E3.5 protein.
Length = 317
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 84 RWVFFSRYCFHYNVL*KLDSK 146
+W+FF + ++YN L K +S+
Sbjct: 112 QWIFFPYFRYYYNTLGKFESE 132
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 141 YPTSRVRCNENNILKRKPICFGK 73
Y T C E N+L R +C+ K
Sbjct: 374 YDTCTTMCEETNVLTRAEVCWDK 396
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 141 YPTSRVRCNENNILKRKPICFGK 73
Y T C E N+L R +C+ K
Sbjct: 374 YDTCTTMCEETNVLTRAEVCWDK 396
>AF106583-11|AAD03138.2| 129|Caenorhabditis elegans Hypothetical
protein F23C8.1 protein.
Length = 129
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 7 TLKLCNAMDDFYSEFKNVLQVSFPE 81
+LKL + +D YS F+N +++F E
Sbjct: 10 SLKLASCLDMEYSSFENATKINFRE 34
>Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 68 FLFPKQMGFLFKILFSLQRTLEV 136
F F K FLF ILF L T+E+
Sbjct: 4 FYFSKANDFLFMILFLLIYTVEI 26
>Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 68 FLFPKQMGFLFKILFSLQRTLEV 136
F F K FLF ILF L T+E+
Sbjct: 4 FYFSKANDFLFMILFLLIYTVEI 26
>Z30423-11|CAD27184.1| 237|Caenorhabditis elegans Hypothetical
protein T20G5.13 protein.
Length = 237
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 37 FYSEFKNVLQVSFPETDGFSF 99
FYSE K Q FP +D F +
Sbjct: 212 FYSEIKRRAQKKFPGSDKFDY 232
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 34 DFYSEFKNVLQVSFPETDGFS 96
++YS+ N L +PE DG+S
Sbjct: 359 NYYSKTPNNLLTGYPEMDGYS 379
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 34 DFYSEFKNVLQVSFPETDGFS 96
++YS+ N L +PE DG+S
Sbjct: 473 NYYSKTPNNLLTGYPEMDGYS 493
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 150 QFCYPTSRVRCNENNILKRKPICFGKRNL*D 58
Q C T + C++ + R +C GK++ D
Sbjct: 290 QRCSGTDKALCDDGTCIMRTQVCDGKKDCTD 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,116,658
Number of Sequences: 27780
Number of extensions: 83017
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -