Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5n01
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   5.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   9.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.3  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 153 FQFCYPTSRVRCNENNILKRKPICFGKRNL*DIFKFTIEIVHC 25
           F   Y TS V  ++ + L   P  FG     DI  F  +  HC
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHC 125


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 56  FLNSL*KSSIALH 18
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 135 TSRVRCNENNILKRKPI 85
           T R   NE+ ++KR PI
Sbjct: 131 TKRPLPNESQLIKRHPI 147


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 182 K*LSSYKTGNFSF 144
           K L ++K GNF F
Sbjct: 74  KLLRTFKNGNFDF 86


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 54  KCLTSFFSRNRW 89
           +C TS +S  RW
Sbjct: 770 QCATSNYSTTRW 781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,011
Number of Sequences: 438
Number of extensions: 1112
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)