Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m23
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    94   2e-20
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    34   0.023
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    31   0.12 
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    31   0.16 
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    28   1.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   2.6  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    26   4.5  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    26   4.5  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   6.0  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   7.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   7.9  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   7.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.9  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 46/91 (50%), Positives = 58/91 (63%)
 Frame = +3

Query: 333 VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYCQ 512
           VLIDVR PDE    G I +S N+P+  ++E +  +S+EEF K Y  +KP   D ++ YC+
Sbjct: 77  VLIDVREPDEFKQ-GAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFSKPVFEDNVVVYCR 134

Query: 513 SGRRSTEALDIALKLGYSKSKTYLGSWNEWS 605
           SGRRST A DI  KLGY     Y GSW EWS
Sbjct: 135 SGRRSTTASDILTKLGYKNIGNYTGSWLEWS 165


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
 Frame = +3

Query: 285 VVSYEDVLKVIHQPEKV---LIDVR-------NPDEVN---TTGKIPSSINIPLNSVQEV 425
           V S++D++KVI  P+     ++D R       N  E      +G IP+SINIP       
Sbjct: 162 VASFDDIVKVIESPDAAGVHIVDARAHERFLGNVPESRPGLASGHIPTSINIPFTETTAA 221

Query: 426 LVSMSNEEFKKQYQRNKPSSTDE---LIFYCQSGRRSTEALDIALKLGYSKSKTYLGSWN 596
            ++    E   +   +    TD+   +I  C SG  ++       + G+   + Y  SW+
Sbjct: 222 GITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSGVTASVLFAALKECGFKDVRVYDESWS 281

Query: 597 EWSR 608
            + +
Sbjct: 282 GYGK 285


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
 Frame = +3

Query: 138 NIITGLQDKIYSLKFKKYFLPYNNNLHL----LGSIRLLVSDKKENKMVDPRRVVSYEDV 305
           N+I   +  I+ +K + +F  YN+ L++    L  I +L  D+  N+ +   R    E  
Sbjct: 309 NLILQKRPSIFDVKTRVFFCKYNDPLYIKMEKLKIITMLACDENINETISELRAYVSEVE 368

Query: 306 LKVIHQPEKVLIDV--RNPDEVNTTGKIPSSI---NIPLNSVQEVLVSM 437
           L+ + Q  K L DV  + P  +N    I   I   NI    VQEV V M
Sbjct: 369 LEFVKQTIKCLGDVALKVPSVINDCISIFLEIYELNISY-MVQEVTVVM 416


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 225 GSIRLLVSDKKENKMVDPRRVVSYEDVLKVIHQPEKVLIDVRNPDEVNTTGKIPSSIN 398
           GSI LL         + P   V   D +KV  QP+ VL+++ +  +  T+GK+ S+++
Sbjct: 190 GSITLLFQRDAAGLEIRPPNFVKDMDWIKVNVQPDVVLVNIADMLQFWTSGKLRSTVH 247


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +3

Query: 354 PDEVNTT--GKIPS----SINIPLNSVQEVLVSMSNEEFKKQYQR 470
           P  +NT    K+PS    ++ +P  SVQE+++    E  K+Q ++
Sbjct: 208 PSAINTATRSKLPSMRLTTVQVPSRSVQEIIIEKDPELLKRQAEK 252


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 309 KVIHQPEKVLIDVR---NPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKP 479
           K I + E    DV     PDE  +T    + ++IP       L +++N    +Q   N+P
Sbjct: 10  KNIEEKENSFFDVTFQDEPDETTSTATGIAKVSIPTPKPSTPLSTLTNGSTIQQSMTNQP 69

Query: 480 SSTDEL 497
             T ++
Sbjct: 70  EPTSQV 75


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  QYHLLNYTDSTNNSFKAHNIITGLQDKIYSLK 179
           Q HLL +  S  ++ +  N++  L DK+YS++
Sbjct: 34  QKHLLVFFGSGGHTGEMLNLLNALDDKLYSVR 65


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 210 NLHLLGSIRLLVSD--KKENKMVDPRRVVSYEDVLKVIHQP 326
           NLH +    +L +    +ENK V P  ++ Y D++K    P
Sbjct: 70  NLHYIRDHGVLPTHLRNRENKNVAPEALIEYADIIKEFKAP 110


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 366 NTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQR 470
           N   +IP+S +I  +S+ + L + S E  +KQY++
Sbjct: 423 NIQREIPASDSIAWHSISKKLGTKSPESCRKQYEK 457


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +3

Query: 213 LHLLGSIRLLVSDKKENKMVDPRRVVSYEDVLKVI-----HQPEKVLIDVRNPDEVNTTG 377
           + LL  +  ++ +   ++  +P R VS+ED ++       H P   + +V +P+ +NT  
Sbjct: 71  IDLLALVLPIIQELTWSRRKEPNRYVSFEDFIEHFDNMGPHYPR--VSEVLSPNLLNTLH 128

Query: 378 KIPSSINIPLNSV 416
           +I   +N P+ S+
Sbjct: 129 RI-CKVNEPVGSL 140


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 189 YFLPYNNNLHLLGSIRLLVSDKKENKMVDP 278
           +FLP++  +HLL   +LL+ DK+ N    P
Sbjct: 640 FFLPFHFRIHLLQ--QLLLLDKQANGYAQP 667


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 63  IRPLCSIQYHLLNY-TDSTNNSFKAHNIITGLQDKIYSLKFKK 188
           I  +C     ++ Y +DS  +SFK   ++ G  D + +L FKK
Sbjct: 159 ILTVCGSSKKIMVYGSDSAISSFKLKAVLRGHLDWVRTLSFKK 201


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 327 EKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFK-KQYQRNKPSSTDELIF 503
           ++++ +V    ++  + K     N   + +++    + NE  + K+Y R K SS D ++ 
Sbjct: 54  DRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSSYDTVLH 113

Query: 504 YCQSGRRSTEAL 539
            C S +   EAL
Sbjct: 114 DCSSLKSVNEAL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,844
Number of Sequences: 5004
Number of extensions: 59232
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)