Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5m23
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 39 0.004
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 34 0.13
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 33 0.22
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 32 0.51
06_03_1459 - 30307859-30307933,30308025-30308078,30308165-303082... 30 1.5
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 2.7
09_02_0210 + 5812428-5812468,5812633-5812895,5814064-5814214,581... 29 2.7
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 8.3
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 28 8.3
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +3
Query: 288 VSYEDVLKVIHQPEK-VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQY 464
V+ ++ +++ E+ +L+DVR P + S+NIPL+ ++E L M K
Sbjct: 325 VTCKEYKRLVDNGERHLLLDVR-PAHHFQIASVSQSLNIPLSELEEKL-QMLETSLKDTT 382
Query: 465 QRNKPSSTDELIFYCQSGRRSTEALDIALKLGYSKSKTYLGSWNEWSR 608
+ L C+ G S A+ + + G+ +K +G W++
Sbjct: 383 DASSSDKPPSLYVVCRRGNDSQIAVQLLREKGFLSAKDIIGGLQSWAQ 430
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +3
Query: 288 VSYEDVLKVIHQPEK-VLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQY 464
VS D KV+ +L+DVR P + SIN+PL+ ++E L + + ++
Sbjct: 331 VSCRDYKKVLDSGRPHLLVDVR-PSHHFQIASMAHSINVPLSLLEEKL-PLLRDSAREVS 388
Query: 465 QRNKPSSTDELIFYCQSGRRSTEALDIALKLGYSKSKTYLGSWNEWSR 608
R + C+ G S A+ I + G+ + G + W++
Sbjct: 389 SRRDGRQHCPVYVICRRGNDSQVAVQILRENGFLYASDVAGGFESWAK 436
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +3
Query: 345 VRNPDEVNTTGKIPSSINIP----LNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYCQ 512
V P + +G +P S +P L+S Q++L EE +K++++ S L+ C
Sbjct: 322 VPEPRKGIRSGHVPGSKCVPFPQLLDSSQKLLPP---EELRKRFEQEGISLDQPLVSSCG 378
Query: 513 SGRRSTEALDIAL-KLGYSKSKTYLGSWNEW 602
+G + L + L +LG + Y GSW EW
Sbjct: 379 TGVTAC-ILALGLHRLGKTDVPVYDGSWTEW 408
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 31.9 bits (69), Expect = 0.51
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 354 PDEVNTTGKIPSSINIP-LNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYCQSGRRST 530
P E +G IP + +P L + + + +E +K++++ S ++ C SG +
Sbjct: 569 PREGVRSGHIPGTKCVPFLEMFDDAPMLLPADEIRKKFEQAGISLDRPIVVTCGSGVTAC 628
Query: 531 EALDIALKLGYSKSKTYLGSWNEW 602
++G Y GSW EW
Sbjct: 629 ILALGLYRIGKQDIPVYDGSWTEW 652
>06_03_1459 -
30307859-30307933,30308025-30308078,30308165-30308235,
30309081-30309154,30309409-30309519,30309548-30309574,
30309612-30309695,30309764-30309807
Length = 179
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 489 DELIFYCQSGRRSTEALDIALKLGYSKSKTYLGSWNEWSRTQ 614
DE+I CQSG+RS A G++ G ++ W +
Sbjct: 133 DEIIVGCQSGKRSLMAASELCSAGFTAVTDIAGGFSAWKENE 174
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 679 YHNMKIYIIISILDRNLRFHYFCVLDHSFQLPKYVF 572
YH +K+ S L +NLR Y VLDH+ Y+F
Sbjct: 278 YHPIKLSFGESSLVKNLRIGYSSVLDHACAELPYIF 313
>09_02_0210 +
5812428-5812468,5812633-5812895,5814064-5814214,
5814678-5814763,5815182-5815286,5815444-5815504,
5816078-5816087
Length = 238
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 441 NEEFKKQYQRNKPSSTDELIFYCQSGRRSTEALDIALKLGY 563
N EF K ++K S +L+ CQ G RST A D+ + G+
Sbjct: 126 NLEFTKMV-KDKFSPESKLLVVCQEGLRSTGAADVLEREGF 165
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 201 YNNNLHLLGSIRLLVSDKKE-NKMVDPRRVVSYEDVLKVIHQPEKVLIDVRNPD---EVN 368
Y LHLL LL + +KE +++ DP+R SY+D + + + + R+ +
Sbjct: 499 YQRMLHLLYVDDLLAAVRKEFSQIYDPKRT-SYDDAFNEVFRQLHLEAEARSEEMKKNKQ 557
Query: 369 TTGKIPSSINIPLN 410
TG P+ + N
Sbjct: 558 VTGSRPTKVTTKTN 571
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = +3
Query: 72 LCSIQYHLLNYTDSTNNSFKAHNIITGLQDKIYSLKFKKYFLPYNNNLHLLGSIRLLVSD 251
L I +HL + T +T NS + I+TG F +++ + L VS
Sbjct: 270 LMYIFHHLAHKTPNTTNSLCGYKIVTGQPSDRLGEDFSEHYKDFTERLTGTEETVRAVSK 329
Query: 252 KKENKMVDPRRVVS 293
+ M D + +S
Sbjct: 330 RLTQGMADFNKAIS 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,319
Number of Sequences: 37544
Number of extensions: 305925
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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