Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m23
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 646 ILDRNLRFHYFCVLDHSFQLP 584
           I + N   H FC+LD  +++P
Sbjct: 277 IANLNFILHLFCLLDVQWRIP 297


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 81  IQYHLLNYTDSTNNSFKAHNIITGLQDKIYSLKFKKYFLPYN 206
           + Y+ L  ++  + +FK  +   G  +++   K KK  +PYN
Sbjct: 574 VLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMPYN 615


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 81  IQYHLLNYTDSTNNSFKAHNIITGLQDKIYSLKFKKYFLPYN 206
           + Y+ L  ++  + +FK  +   G  +++   K KK  +PYN
Sbjct: 574 VLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKKEGMPYN 615


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 312 VIHQPEKVLIDVR 350
           VIHQP  ++ID++
Sbjct: 139 VIHQPRIIIIDLK 151


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 348 RNPDEVNTTGKIPSSINIPLNS 413
           R PD  + T K P  ++ PLN+
Sbjct: 182 RTPDPHDETAKKPRVLSPPLNN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,541
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)