Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5m16
(437 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 31 0.42
SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7) 30 0.73
SB_52174| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 2.9
SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_14716| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_52175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 27 5.1
SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1) 27 5.1
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 27 6.8
SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1) 27 6.8
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) 27 8.9
SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 27 8.9
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 15 NKECKKREKTASNLNESIKAKLKESL--TQNTVVTGDTASNQISRTRQSN 158
NKE KKR K+ + LN+S K+K +S + N T ++ + ++ R+S+
Sbjct: 673 NKEGKKRNKSTTPLNQSRKSKTNQSRYGSDNDETTAGRSAREDAKGRRSH 722
>SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)
Length = 497
Score = 30.3 bits (65), Expect = 0.73
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 275 QNQKVISIYQPRTNATGKWICRDPFSVNPNEIRL*IYFLR 394
QNQ ++ +Y RT+ +C D + N+ + +Y++R
Sbjct: 187 QNQSLVCVYYMRTSQNQSLVCVDHLRTSQNQSLVCVYYMR 226
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 275 QNQKVISIYQPRTNATGKWICRDPFSVNPNEIRL*IYFLR 394
QNQ ++ +Y RT+ +C + N+ + +Y++R
Sbjct: 321 QNQSLVCVYYMRTSQNQSLVCVYDMRTSQNQSLVCVYYMR 360
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 275 QNQKVISIYQPRTNATGKWICRDPFSVNPNEIRL*IYFLR 394
QNQ ++ +Y RT+ +C + N+ + +Y+LR
Sbjct: 391 QNQSLVCVYYMRTSQNQSLVCVYYMRTSQNQSLVFVYYLR 430
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 275 QNQKVISIYQPRTNATGKWICRDPFSVNPNEIRL*IYFLR 394
QNQ ++ +Y RT+ +C + N+ + +Y++R
Sbjct: 33 QNQSLVCVYHMRTSQNQSLVCVYYMRTSQNQSLVCVYYMR 72
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 275 QNQKVISIYQPRTNATGKWICRDPFSVNPNEIRL*IYFLR 394
QNQ ++ +Y RT+ +C + N+ + +Y++R
Sbjct: 377 QNQSLVCVYDMRTSQNQSLVCVYYMRTSQNQSLVCVYYMR 416
>SB_52174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 ESLTQNTVVTGDTASNQISRTRQSNVKKEGF-YNFKSMLL 200
+ LTQ T+V + I Q NVKKE F Y K+M++
Sbjct: 353 DRLTQQTIVDNSDSHAMIRVNHQGNVKKESFSYLDKAMII 392
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 167 GGILQLQEHVVAKRGVARRRPTEESEQTHEKTCEKCQNQKV 289
G I Q++EHV+A + A+RR E Q KT + Q++ +
Sbjct: 2830 GEIQQMKEHVIALQEQAKRREKELHAQLLAKTRQLEQSEDI 2870
>SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 9 AMNKECKKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQ--SNVKKEGF 176
A++ + ++ + NL + LKE LT+ + T ++ +SR R+ ++V K+ F
Sbjct: 72 ALHSDLQEPQLNGKNLESNTVTSLKEELTRRALSTAGKKNDLVSRLRKAMASVVKDRF 129
>SB_14716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 60 ESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKKEGFY 179
+ IK ++K+ N + T + A +I T S KKE FY
Sbjct: 30 DGIKVQIKDK--SNALETPEKAKKKIKETESSQDKKEDFY 67
>SB_52175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 ESLTQNTVVTGDTASNQISRTRQSNVKKEGF-YNFKSMLL 200
+ LTQ T+V + I Q NVKKE F Y K M++
Sbjct: 290 DRLTQQTIVDNSDSHALIRINHQGNVKKESFSYLDKVMII 329
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 182 LQEHVVAKRGVARRRPTEESEQTH 253
L+ HV + AR RP+ +SEQ H
Sbjct: 604 LERHVTSNNLPARNRPSSQSEQRH 627
>SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1)
Length = 378
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 161 EEGGILQLQEHVVAKRGVARRRPTEESE 244
E+GG+L Q + G A+RRPT E
Sbjct: 155 EQGGVLTSQRKTGNEEGGAKRRPTNTKE 182
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +3
Query: 45 ASNLNESIKAKLKESLTQNTVVTGDT---ASNQISRTRQSNVKKEGFYNFKSMLLRSV 209
A++ + +KA+LK + + V + A + + +T++S +KK GF +FK M LR +
Sbjct: 902 ATSKAKELKAQLKIKIAELKVKAEELKQKAKDMVEKTKKS-IKK-GFNDFKQMKLREI 957
>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
Length = 505
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 236 ESEQTHEKTCEKCQNQKVISIYQ 304
+ E TH CE CQ SIY+
Sbjct: 195 DGETTHRYNCESCQVNNCCSIYE 217
>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
Length = 924
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 78 LKESLTQNTVVTGDTASNQISRTRQSNVKKEGFYNFKSMLLRSVESQGVVQQ 233
++E L +NT +T DTA N + S + E + S+ ++ +G ++
Sbjct: 136 IRERLLRNTELTLDTAINAVRAAETSKTQIENLKDGASLAAGALNKRGTARR 187
>SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 879
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 290 ISIYQPRTNATGKWICRDPFSVNPN 364
+S QP T A KWI +PF ++ N
Sbjct: 188 VSNAQPETKAVIKWIYENPFVLSAN 212
>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1082
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 3 LAAMNKECKKREKTASNLNESIKAKLKE 86
L N+E KKR + + + ++S+KA+ KE
Sbjct: 449 LNEQNQERKKRRRESGDTDDSVKARKKE 476
>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 290 ISIYQPRTNATGKWICRDPFSVNPN 364
+S QP T A KWI +PF ++ N
Sbjct: 188 VSNAQPETKAVIKWIYENPFVLSAN 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,061
Number of Sequences: 59808
Number of extensions: 190822
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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