Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m16
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL132860-32|CAO82074.1|  570|Caenorhabditis elegans Hypothetical...    27   4.5  
AL132860-31|CAB60519.2|  457|Caenorhabditis elegans Hypothetical...    27   4.5  
AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacti...    27   7.9  
AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacti...    27   7.9  
AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacti...    27   7.9  

>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 128 KSNFKNETE*REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKTCEKCQNQK 286
           K   K E + R   G+LQL+      +   +RR   E E+  E+  EK + +K
Sbjct: 283 KEKLKKELDRRPNDGVLQLETEDFDWKPRRKRRKELEKEREAEEAAEKRKKEK 335


>AL132860-32|CAO82074.1|  570|Caenorhabditis elegans Hypothetical
           protein Y56A3A.7b protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 27  KKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKK 167
           +++EK    + E+IK ++++    NT++    AS    R R   ++K
Sbjct: 274 EEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRK 320


>AL132860-31|CAB60519.2|  457|Caenorhabditis elegans Hypothetical
           protein Y56A3A.7a protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 27  KKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKK 167
           +++EK    + E+IK ++++    NT++    AS    R R   ++K
Sbjct: 274 EEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRK 320


>AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacting
           protein protein4, isoform b protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 262
           R E   L+ Q     +R VA++ P EES  +HE++
Sbjct: 347 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 381


>AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacting
           protein protein4, isoform f protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 262
           R E   L+ Q     +R VA++ P EES  +HE++
Sbjct: 343 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 377


>AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacting
           protein protein4, isoform a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 262
           R E   L+ Q     +R VA++ P EES  +HE++
Sbjct: 324 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,125
Number of Sequences: 27780
Number of extensions: 152252
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)