Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m15
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    35   0.050
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    33   0.15 
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 574 DKWMKQAKVIDGKKITTTDTAIHFKKLKSVK 666
           DKW+K A V+D K IT T T I F K+   K
Sbjct: 38  DKWLKDAGVLDNKAITGTMTGIAFSKVTGPK 68


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 458 MERPVKARITPYLSRK-PSRRFPNLEIPSP 544
           +ERPV AR TPY+ R  P+R  P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 458 MERPVKARITPYLSRKPSRRFPNLE----IPSPMEKPSRSR 568
           +ERPV AR  PY+   P+R  P +E     P P  +P R+R
Sbjct: 210 IERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRTR 250



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +2

Query: 458 MERPVKARITPYLSR-KPSRRFPNLE-----IPSPMEKPSRSRKATNG*SKPKSLMERK* 619
           +ERPV AR  PY+ R +P+R  P +E      P+P  +P+ +R A            R  
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQ 245

Query: 620 QQRTRPF 640
             RTRP+
Sbjct: 246 PPRTRPY 252


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 525 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 409
           +GK   GFL R  + LA+T   + C  RV V  +D ++F
Sbjct: 321 YGKIFGGFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 525 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 391
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 301 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 350


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 525 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 391
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 256 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 305


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +1

Query: 379 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 558
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 559 TLSQSDKWMKQAKVIDGKKITTT 627
           TL    K+ +  ++ + KK+T T
Sbjct: 362 TLISEGKFSELFELAEQKKLTLT 384


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +1

Query: 379 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 558
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 559 TLSQSDKWMKQAKVIDGKKITTT 627
           TL    K+ +  ++ + KK+T T
Sbjct: 362 TLISEGKFSELFELAEQKKLTLT 384


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 102 VKSLSFQVFNGILLIARFFLHNARCNN 22
           ++S++    +G L+I   FLHNA CN+
Sbjct: 303 IQSINLDTCDGSLVICVKFLHNADCNH 329


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/96 (21%), Positives = 39/96 (40%)
 Frame = +1

Query: 355 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGD 534
           K S +  + +A +  +   V  VKLENG         + K ED +L              
Sbjct: 170 KFSLDFGDAEAIIRMLDSVV--VKLENGTEDELKAVLAQKLEDESLADIKKDENGNGTEQ 227

Query: 535 PKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIH 642
           PK + +    S + + +++  + DG + ++    IH
Sbjct: 228 PKEEPEVKQESGATEELEEGAIEDGTEKSSNKVNIH 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,446
Number of Sequences: 27780
Number of extensions: 305595
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)