Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m14
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0046 + 14040331-14040801,14040915-14041050,14041159-140412...    28   6.1  
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905...    28   6.1  
04_01_0447 - 5817333-5817341,5819044-5819335,5819833-5820029           28   8.0  
02_01_0373 + 2673483-2673506,2673952-2674134                           28   8.0  

>03_03_0046 +
           14040331-14040801,14040915-14041050,14041159-14041295,
           14041366-14041965
          Length = 447

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 318 EFVGLVCDDEEMLIVYRF--RGLSAEHPLRR 232
           + +G  C+DEE L+VY F  RG    H  +R
Sbjct: 173 KLLGYCCEDEERLLVYEFMPRGSLENHLFKR 203


>01_06_0159 +
           27089006-27089064,27089925-27090007,27090414-27090588,
           27091442-27091592,27091629-27091752,27092378-27092446,
           27093197-27093291
          Length = 251

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 170 APSWPFISSIADLIGHAISMH 108
           APSWP +S    L+GH  S H
Sbjct: 3   APSWPTVSKNLPLLGHGRSHH 23


>04_01_0447 - 5817333-5817341,5819044-5819335,5819833-5820029
          Length = 165

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 489 LHGFQALSPPSIRFPELAVQTTRKQAWFETSPAREVQS 602
           + GF++LSPP   FP +  ++ R +   E+ P  E ++
Sbjct: 34  IDGFRSLSPPLSVFPRIGAKSHRIEFGLESCPKVEPEN 71


>02_01_0373 + 2673483-2673506,2673952-2674134
          Length = 68

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 244 MLSAESSKPVHDEHLFIITHQAYELWFKQIIFEVDSVRALLNVEGLDESHTMEILKR 414
           ML+AE   P    +LF++  Q Y  W   ++F    +  + N   ++E  TM   KR
Sbjct: 10  MLAAEV--PAGGRYLFLLVDQTYCRWMWMVMFGAGLLVDVNNENDINERETMTREKR 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,948
Number of Sequences: 37544
Number of extensions: 322645
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)