Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m14
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.13 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 489 VERCHRLQN--HHLIHQQFQDEHNPVESLQ 406
           ++R H LQN  HHL     QD H P +  Q
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHHRPYQQQQ 167


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 312 VGLVCDDEEMLIVYRFRG 259
           VGL  +DEE L+   FRG
Sbjct: 20  VGLCSEDEERLVRDLFRG 37


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 SSKPVHDEHLFIITHQAYELWFKQIIFEVDSVRAL-LNVEGL 381
           S+KPV DE++ +++++  ++      F+  + R L  NV+ L
Sbjct: 367 SNKPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRILGANVKEL 408


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 491  SWISGTISAQHQVSR 535
            SW +GT+S Q Q  R
Sbjct: 1079 SWTAGTVSQQKQKRR 1093


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,367
Number of Sequences: 438
Number of extensions: 3200
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)