Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m11
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0726 + 31514480-31514932                                         33   0.17 
09_04_0347 + 16887182-16888504                                         29   3.7  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   3.7  
08_01_0039 + 284948-285301                                             28   6.4  
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688     28   6.4  
10_08_0002 - 13986969-13989338                                         28   8.5  
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927...    28   8.5  

>01_06_0726 + 31514480-31514932
          Length = 150

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
 Frame = -3

Query: 438 SLWQAGSGGGGHASRKQSAEILSRAL---ESSPCTTW--HS*WYNILPS*ARK-----*S 289
           S W + SG GG   R+ SA + S  L   + SP   W  H  W  +L   A++      S
Sbjct: 34  SSWPSLSGAGGTGRRRGSAVVRSLQLVVRDVSPAAGWCGHRAWRRLLRRLAQETRCICSS 93

Query: 288 AS*EISASDKPITDRSGPASIETNFD 211
           +S   +AS +PIT     AS   NFD
Sbjct: 94  SSPSGAASSRPITFGYDAASYAKNFD 119


>09_04_0347 + 16887182-16888504
          Length = 440

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 273 SASDKPIT--DRSGPASIETNFDSEISEFPSGS 181
           +ASD P    + SGP SIE N DSE S  P  S
Sbjct: 80  AASDSPRAAGNPSGPRSIEVNSDSEDSALPLAS 112


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -3

Query: 273  SASDKPITDRSGPASIETNFDSEISEFPSGSRGRYQSQRLRPTRKAA--ARILLHVFQTS 100
            +   +P   RSG     ++  S      S  RG+ +S   RP  +AA  A +++  F  +
Sbjct: 1210 AVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFA 1269

Query: 99   AKRTIVSCILNSDALCTPPN 40
                IV+C+  S     PP+
Sbjct: 1270 LLLAIVACVCCSKKKKRPPH 1289


>08_01_0039 + 284948-285301
          Length = 117

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 480 VASRQQSRLICH*SSLWQAGSGGGGHASRK 391
           VA R++ R  C     W AG GGGG AS +
Sbjct: 17  VARRRRHRRSCGDVGGWWAGVGGGGKASMR 46


>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
          Length = 241

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 449 ATDLAYGRPVPAEEDMPLGSNLRKSYRGRWNLHRARPGTADG 324
           A     GR V AEE++ LG   R+    RW+  RA  G   G
Sbjct: 23  AAQYQMGRGVVAEEEVELGGGGRRRGSKRWSKKRAGRGGYGG 64


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 400 GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEESTFETLFSGL 525
           G S + G GL  A  +AN   L P   ++FE    E+L  GL
Sbjct: 11  GESGNGGAGLGLAAFIANGEDLGPIVRHAFESGKPESLLQGL 52


>06_02_0365 +
           15190841-15190988,15191296-15191754,15192692-15192782,
           15192902-15193003,15193126-15193228,15193548-15193685,
           15193912-15193974,15195042-15195124,15196312-15196411,
           15196640-15196717,15196834-15196941,15197987-15198067,
           15200179-15200220,15200221-15200283,15200426-15200482
          Length = 571

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 446 WQIRRLCCLLATIASRNLPLKPYFQDYE 529
           WQ+ ++  LLA IAS  +P    +  YE
Sbjct: 531 WQVSKVAALLAPIASSGMPTTLQYPPYE 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,526
Number of Sequences: 37544
Number of extensions: 400204
Number of successful extensions: 1471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)