Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m09
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   2.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   3.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   4.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.9  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   7.9  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 335 HFGGGTTFVFFCNACIVKAGTILGFLVL 252
           H GGG     F N  IVK  ++ G LVL
Sbjct: 410 HVGGGLKIHVFDNEIIVKVNSVTGRLVL 437


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 267 KNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVQKMLSKRRISRL 410
           K RS     S+ KE+      K+ +      + DD+Q +LSK RISR+
Sbjct: 329 KQRSKDEYASLYKEYTRKEQEKLRK------QNDDLQNLLSKHRISRI 370


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 472 FHHYLPMFFDGLAEGTYPYSFIVERGIHDLVTK 570
           F   L + FD  ++GT+P SF++++    ++T+
Sbjct: 575 FAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTE 607


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +1

Query: 295 ALQKNTKVVPPPKCGVFDPLPPRPTMFRKCYQRGEFPVCIE-FTITGKQLAWKVPIEKLD 471
           +L  + +V+ P  CG F  +        K   R  FP  +  + +T  +L W +  + LD
Sbjct: 240 SLVDDRQVILPDSCGYFCIMGEIAMTLTKL--RELFPSKLTPYVVTFVELVWNIIEKLLD 297

Query: 472 FHHYLPMFFDGLAEGT----YPYSFIVE 543
            +    +F DGL +      YP  ++VE
Sbjct: 298 PYIREVVFSDGLDDSAFGDKYPIRYLVE 325


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 358 PRPTMFRKCYQRGEFPVCIEFTITGKQLA--WKVPIEKLDFHHYLPMF 495
           P P  F  C +  +    I+     KQLA  WK  IE+  FHH   +F
Sbjct: 611 PSPLTFA-CKEIRKLVADIKPVSVEKQLALNWKKDIERPSFHHNQQLF 657


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 304 KNTKVVPPPKCGVFDPLPPRPTMFRKCYQ 390
           K TK+ P P C +   L P  T F K Y+
Sbjct: 104 KPTKIYPLPHCFIVKDLVPDLTYFYKQYK 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,185
Number of Sequences: 5004
Number of extensions: 65515
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)