Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m09
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0109 + 1338525-1338590,1338744-1339325                           31   0.88 
02_03_0380 + 18335903-18337837                                         31   1.2  
04_03_0737 - 19152942-19154930                                         30   1.5  
04_03_0739 + 19180048-19182039                                         30   2.0  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    30   2.0  
01_01_0361 + 2838979-2841745,2841897-2842285                           29   3.5  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    29   4.7  
04_03_0437 + 15920806-15920811,15921257-15921429,15921515-159215...    28   6.2  
11_06_0610 - 25449085-25453284                                         28   8.2  

>10_01_0109 + 1338525-1338590,1338744-1339325
          Length = 215

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 588 SRSPAANHSHKKCLGDEAPCSHLSRPKMHSNDCDGV 695
           SR     HS KK      PCS  ++  +HS D D V
Sbjct: 178 SRKEEPRHSSKKSKPSSVPCSKQAKGPLHSKDLDDV 213


>02_03_0380 + 18335903-18337837
          Length = 644

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 FRNSLKKPSPNYPYGYKTRKPRIVPAFTIQALQKNTK 315
           + N L +    +P GYKT    I P + IQ L + TK
Sbjct: 414 WHNELDQQKREFPLGYKTFGEEIPPQYAIQVLDELTK 450


>04_03_0737 - 19152942-19154930
          Length = 662

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 FRNSLKKPSPNYPYGYKTRKPRIVPAFTIQALQKNT 312
           +R+ L+K    +P GY+T    I P + IQ L + T
Sbjct: 431 WRSELEKKKAEFPLGYRTFGEEIPPQYAIQVLDEVT 466


>04_03_0739 + 19180048-19182039
          Length = 663

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 FRNSLKKPSPNYPYGYKTRKPRIVPAFTIQALQKNT 312
           +R+ L+K    +P GY+T    I P + IQ L + T
Sbjct: 431 WRSELEKKKVEFPLGYRTFGEEIPPQYAIQVLDEVT 466


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 229 SPNYPYGYKTRKPRIVPAFTIQALQKNTKVVPPPKCGVFDPLPPRPTMF 375
           SP+ P  + +  P  +P  T++ +     V PPP   +  PLPP   +F
Sbjct: 347 SPSPPPLHGSVMPPPLPPATVEPVISAPMVEPPPPPAMITPLPPSTPVF 395


>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 240  SLWL*DEEAKNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVQKMLSKRRISRLHRV 419
            ++WL  EEAKN+    D SIT+         + RL    S+     +ML    +S++H +
Sbjct: 982  TIWL-HEEAKNKD-ITDASITRSIVQDCLVSVLRLGISCSKQQAKDRMLLADAVSKMHAI 1039


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 56  LFYYLCQHFRS--ILSDYLLETFLHCVSCFFDLLSLKWFCCRPV 181
           +F+ LC HFRS  +L D L  T    ++ F  ++  KW C R V
Sbjct: 192 IFHKLCGHFRSRGLLVDTLHVTVEEQIAMFMHIVGHKW-CNRSV 234


>04_03_0437 +
           15920806-15920811,15921257-15921429,15921515-15921559,
           15923662-15923821,15924709-15925047
          Length = 240

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 157 KMVLLPPCVPQSCGKDFRNSLKKPSPNYPYGYKTRKPRIVPAFTIQALQKNTKV 318
           K +L P    Q  G++ RN L       P G +T  PR  P    + L+KN K+
Sbjct: 95  KWLLAPTRENQVAGRENRNDLYDFLKRSPIGMETNLPRFQP----ENLEKNAKI 144


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
 Frame = +1

Query: 172 PPCVPQSCGKDFRNSLKKPS-----PNYPYGYKTRKPRIVPAFTIQALQKNTKVVPPPKC 336
           PP  P+S       S   P+     P  P G+    P+  P          +K  PPP  
Sbjct: 541 PPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTP 600

Query: 337 GVFDPLPPRPT 369
             + P PP+ T
Sbjct: 601 EEYTPSPPKST 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,700
Number of Sequences: 37544
Number of extensions: 451395
Number of successful extensions: 1317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)