Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m08
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    55   1e-08
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    28   1.5  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    26   4.7  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   6.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   8.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.2  

>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
 Frame = +3

Query: 306 ISSRLVGGKGGFGSMLRAIGAQIEK----TTNREACRDLSGRRLRDINEEKRLRKWL 464
           + +R++GGKGGFGS LRA G ++ K      N+++CRDL G RL  I + K L ++L
Sbjct: 77  LCTRVLGGKGGFGSQLRAAGGRMSKKRNEQENQDSCRDLDGNRLGTIRQAKELSEYL 133


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 344 TESTFSSNQP*RYSNYILTIFEDEITCNSLPIDRNV*IFSGYAIS 210
           TEST S       S+++L + +DE+ C  +  +  + IF G A++
Sbjct: 209 TESTTSFFPSPENSSFVLCLHKDELLCLDIQSNSTLKIFEGSALA 253


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 233 FIRYDQWEDYCK*FRPQKLSKYS*NIVKVGWRKRWI 340
           F+ Y  WED CK      + +   NIVK+     WI
Sbjct: 89  FMSYSTWEDACK--NAATVMRAGANIVKIEGGGNWI 122


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 225 WVCHILKIFRISVTTH----LCNRCHEWIYSQTKQDFPFCMY 112
           W+  ++ I  I +  +    L +  ++WI+S++K DF F ++
Sbjct: 46  WITRVVIIVLIVLAWYFFSLLLSMMNKWIFSESKMDFQFPLF 87


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 NTYKMESLVLFENKSIHDIDCTDVSSLKCEISLRYGIPTEDLYVTI 248
           N+++  + V+    +I DID +    L C  SLR+G    D +V +
Sbjct: 195 NSFQPVNKVVAHTGTISDIDTSGNLLLSCGYSLRHGTYMLDPFVKV 240


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 445 FSSLMSRSRRPERSRQASRFVVFSI*APIARNIE-PNPPFPPTNLDDILTIF 293
           ++S ++   +  R +Q    + F +       IE P+  +PP ++DD+ ++F
Sbjct: 22  YNSQVTNEIQTFRKQQVDSQLFFDVLLSFIEGIEDPSSLYPPKSIDDLQSLF 73


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 327 GKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRDINEEKRLRK 458
           GKG FG +LR I  +  K    +  R+     ++ + E K L+K
Sbjct: 706 GKGSFGQVLRCIDYETGKLVALKIIRNKKRFHMQALVETKILQK 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,829
Number of Sequences: 5004
Number of extensions: 57145
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)