Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m08
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401     66   3e-11
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537     38   0.006
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    31   1.2  
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     29   2.8  

>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
          Length = 444

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
 Frame = +3

Query: 315 RLVGGKGGFGSMLRAIGAQI--EKTTNREACRDLSGRRLRDINEEKRLRKW 461
           RL GGKGGFGS+LR   ++   +KT+N +ACRD++GRRLR +N E+RL +W
Sbjct: 79  RLRGGKGGFGSLLRGAASKAGQKKTSNFDACRDINGRRLRHVNAERRLEEW 129


>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
          Length = 900

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 105 IINTYKMESLVLFENKSIHDIDCTDVSSL--KCEISL---RYGIPTEDLYVTINGKTIAS 269
           II   K     + E +S  DID  DVS+L  K E+SL   RY I  +D++ T     I S
Sbjct: 240 IIKPKKSNENSINEEQSTGDIDSMDVSTLFQKLEVSLTGMRYLIVIDDVWSTSAWNAIQS 299

Query: 270 NFVLKNCQNIVRISSRL 320
                NC +I+ +++R+
Sbjct: 300 KLPENNCGSIIMVTTRV 316


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -2

Query: 672 QPLFFLNCLQKWKHSAS----QHLQQRSPVLVTLDAP 574
           +PLFF  CLQK KH+ S      +QQ S V+V ++ P
Sbjct: 502 RPLFFFRCLQK-KHTPSLQKPSFVQQGSKVIVDMEKP 537


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 KTIASNFVLKNC-QNIVRISSRLVGGKGGFGSMLRAIGAQIEKTTNREACRDLS 413
           K +A  F+ ++  Q       ++VG  GG    ++AIG+ +   TN E  +D+S
Sbjct: 354 KQMAFGFIDQHMDQQFEGFGRKIVGKCGGLPLAIKAIGSSLRGETNEETWKDVS 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,862
Number of Sequences: 37544
Number of extensions: 336003
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)