Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5m08
(721 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071563-1|AAH71563.1| 451|Homo sapiens C1orf55 protein protein. 113 5e-25
AL133288-2|CAI22306.1| 451|Homo sapiens chromosome 1 open readi... 113 5e-25
AK127780-1|BAC87130.1| 439|Homo sapiens protein ( Homo sapiens ... 109 1e-23
EF375726-1|ABN46990.1| 465|Homo sapiens parkin 2 protein. 33 1.4
BC022014-1|AAH22014.1| 387|Homo sapiens PARK2 protein protein. 33 1.4
AL445215-2|CAH73682.1| 437|Homo sapiens Parkinson disease (auto... 33 1.4
AL445215-1|CAH73681.1| 465|Homo sapiens Parkinson disease (auto... 33 1.4
AL132982-2|CAI23602.1| 437|Homo sapiens Parkinson disease (auto... 33 1.4
AL132982-1|CAI23601.1| 465|Homo sapiens Parkinson disease (auto... 33 1.4
AL035697-3|CAI21386.1| 437|Homo sapiens Parkinson disease (auto... 33 1.4
AL035697-2|CAI21385.1| 465|Homo sapiens Parkinson disease (auto... 33 1.4
AL035697-1|CAI21384.1| 368|Homo sapiens Parkinson disease (auto... 33 1.4
AB245403-1|BAF43729.1| 465|Homo sapiens parkin 2 protein. 33 1.4
AB009973-1|BAA25751.1| 465|Homo sapiens Parkin protein. 33 1.4
AK091491-1|BAC03675.1| 891|Homo sapiens protein ( Homo sapiens ... 31 3.1
AK128034-1|BAC87239.1| 130|Homo sapiens protein ( Homo sapiens ... 30 9.6
>BC071563-1|AAH71563.1| 451|Homo sapiens C1orf55 protein protein.
Length = 451
Score = 113 bits (273), Expect = 5e-25
Identities = 60/141 (42%), Positives = 84/141 (59%)
Frame = +3
Query: 219 IPTEDLYVTINGKTIASNFVLKNCQNIVRISSRLVGGKGGFGSMLRAIGAQIEKTTNREA 398
+P E+ +V NG I ++ +++ + + RL GGKGGFGSMLRA+GAQIEKTTNREA
Sbjct: 42 VPVENFFVKCNGALINTSDTVQHGA-VYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREA 100
Query: 399 CRDLSGRRLRDINEEKRLRKWLDGXXXXXXXXXXXXXXXXXXXLAEPKIEVNLNPEYEKE 578
CRDLSGRRLRD+N EK + +W+ L EPK +P+Y+++
Sbjct: 101 CRDLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLVEPK-HCFTSPDYQQQ 159
Query: 579 RQALPERVSAAVDAGWQNAST 641
+ ER+ +V G Q AS+
Sbjct: 160 CHEMAERLEDSVLKGMQAASS 180
>AL133288-2|CAI22306.1| 451|Homo sapiens chromosome 1 open reading
frame 55 protein.
Length = 451
Score = 113 bits (273), Expect = 5e-25
Identities = 60/141 (42%), Positives = 84/141 (59%)
Frame = +3
Query: 219 IPTEDLYVTINGKTIASNFVLKNCQNIVRISSRLVGGKGGFGSMLRAIGAQIEKTTNREA 398
+P E+ +V NG I ++ +++ + + RL GGKGGFGSMLRA+GAQIEKTTNREA
Sbjct: 42 VPVENFFVKCNGALINTSDTVQHGA-VYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREA 100
Query: 399 CRDLSGRRLRDINEEKRLRKWLDGXXXXXXXXXXXXXXXXXXXLAEPKIEVNLNPEYEKE 578
CRDLSGRRLRD+N EK + +W+ L EPK +P+Y+++
Sbjct: 101 CRDLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLVEPK-HCFTSPDYQQQ 159
Query: 579 RQALPERVSAAVDAGWQNAST 641
+ ER+ +V G Q AS+
Sbjct: 160 CHEMAERLEDSVLKGMQAASS 180
>AK127780-1|BAC87130.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ45881 fis, clone OCBBF3020414. ).
Length = 439
Score = 109 bits (261), Expect = 1e-23
Identities = 57/124 (45%), Positives = 74/124 (59%)
Frame = +3
Query: 270 NFVLKNCQNIVRISSRLVGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRDINEEKR 449
NF +K + + RL GGKGGFGSMLRA+GAQIEKTTNREACRDLSGRRLRD+N EK
Sbjct: 46 NFFVKCNGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKA 105
Query: 450 LRKWLDGXXXXXXXXXXXXXXXXXXXLAEPKIEVNLNPEYEKERQALPERVSAAVDAGWQ 629
+ +W+ L EPK +P+Y+++ + ER+ +V G Q
Sbjct: 106 MAEWVKQQAEREAEKEQKRLERLQRKLVEPK-HCFTSPDYQQQCHGMAERLEDSVLKGMQ 164
Query: 630 NAST 641
AS+
Sbjct: 165 AASS 168
>EF375726-1|ABN46990.1| 465|Homo sapiens parkin 2 protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>BC022014-1|AAH22014.1| 387|Homo sapiens PARK2 protein protein.
Length = 387
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL445215-2|CAH73682.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)eta protein.
Length = 437
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL445215-1|CAH73681.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)ier family 9
(sodium\/hydrogen protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL132982-2|CAI23602.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)rate protein.
Length = 437
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL132982-1|CAI23601.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)lo2, SUR4/Elo3,
yeast)-like 4 protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL035697-3|CAI21386.1| 437|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)r 1 protein.
Length = 437
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL035697-2|CAI21385.1| 465|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)adenine nucleotide
translocato protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AL035697-1|CAI21384.1| 368|Homo sapiens Parkinson disease
(autosomal recessive, juvenile)family, member 1 protein.
Length = 368
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AB245403-1|BAF43729.1| 465|Homo sapiens parkin 2 protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AB009973-1|BAA25751.1| 465|Homo sapiens Parkin protein.
Length = 465
Score = 32.7 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 174 TDVSSLKCEISLRYGIPTEDLYVTINGKTIASNFVLKNC----QNIVRISSR 317
T + LK ++ R G+P + L V GK + +++ ++NC Q+IV I R
Sbjct: 21 TSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQR 72
>AK091491-1|BAC03675.1| 891|Homo sapiens protein ( Homo sapiens
cDNA FLJ34172 fis, clone FCBBF3015758, highly similar to
Rattus norvegicus Munc13-3 mRNA. ).
Length = 891
Score = 31.5 bits (68), Expect = 3.1
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = -2
Query: 675 CQPLFFLNCLQKWKHSASQH-LQQRSPVLVT-LDAPSRIPDSDSP-LFLVLQESFRFSFV 505
CQ L +CLQ+ +S+H + ++ ++T + +I + + P +F V+QE F+ S
Sbjct: 105 CQDLLNADCLQRAAEKSSKHGAEDKTQTIITAMKERMKIREKNRPEVFEVIQEMFQISKE 164
Query: 504 FFLQ 493
F+Q
Sbjct: 165 DFVQ 168
>AK128034-1|BAC87239.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ46153 fis, clone TESTI4001037. ).
Length = 130
Score = 29.9 bits (64), Expect = 9.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 700 FFFLFLALMSTAFLFKLPSEVEAF 629
FFFLFL+ + FLF LPS + +F
Sbjct: 30 FFFLFLSFSFSFFLFSLPSFLPSF 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,787,512
Number of Sequences: 237096
Number of extensions: 1885124
Number of successful extensions: 4133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4129
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -