Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m08
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.54 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.95 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   2.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 367 LKLRKLRIGKPAVTSQDVDY 426
           LKL +  IGKP V  + VDY
Sbjct: 159 LKLLQYDIGKPVVAEETVDY 178


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 515 NRKDSCRTKNRGESESGIREGASSVTRTGERCCRCWLAECFH 640
           N  ++    N G +++G   GAS+    G+  C   L    H
Sbjct: 242 NNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGH 283


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 297 IVRISSRLVGGKGGFG 344
           ++ I S LVGG GGFG
Sbjct: 11  LLAIFSMLVGGFGGFG 26


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 297 IVRISSRLVGGKGGFG 344
           ++ + S LVGG GGFG
Sbjct: 11  LLAVFSMLVGGFGGFG 26


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/28 (21%), Positives = 19/28 (67%)
 Frame = +1

Query: 214 MAYPLKIYTLRSMGRLLQVISSSKIVKI 297
           + +PL++YT+  + R ++ I ++ ++ +
Sbjct: 143 ICHPLRVYTISGLKRPIRFILAAWLIAL 170


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 463 NHFLNLFSSLMSRSRRPERSRQASRFVVFSI*APIARNIEPNPPFPP 323
           +H++    + +     P R      +V      P +R+I P  PFPP
Sbjct: 332 SHYIEQIPAPVYYGNFPPRPIMVRPWVPMRGQVPGSRHIGPLTPFPP 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,651
Number of Sequences: 438
Number of extensions: 4063
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)