Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m07
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...   241   1e-64
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    27   2.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.9  
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    25   8.8  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score =  241 bits (589), Expect = 1e-64
 Identities = 112/196 (57%), Positives = 150/196 (76%), Gaps = 2/196 (1%)
 Frame = +1

Query: 172 LKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEVTLQPL 351
           +KND +LRAA G+ V++ PVW+MRQAGRYLPE+ ++R K  FF +C+TPE ACE+TLQP+
Sbjct: 1   MKNDLILRAAKGEEVERPPVWIMRQAGRYLPEYHKLRAKQSFFEMCQTPETACELTLQPV 60

Query: 352 RRYEHL-DASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVS-RL 525
            R++ L DA+IIFSDILVIPQALGM V M    GP FPKPL  P +ID L+    +S +L
Sbjct: 61  TRFKGLLDAAIIFSDILVIPQALGMQVVMLEQKGPHFPKPLVVPEDIDLLEKTPNISAKL 120

Query: 526 DYVGKAITLTRHKIDGKVPLIGFTGAPFTLFGYMLEGGGSKTMSKTKEWLEKYPKDVHRL 705
            YV  AI+LTR K+DG+VPL+GF+GAP+T+  YM+EGGGSKT +K K WL +YP+  H+L
Sbjct: 121 GYVMDAISLTREKLDGQVPLMGFSGAPWTIMAYMIEGGGSKTFAKAKSWLFRYPEASHKL 180

Query: 706 LCLLTNVIIDYVVMQV 753
           L ++T+  + Y++ QV
Sbjct: 181 LKIITDATVSYLIQQV 196


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 499 GDHLFLMGFEVV*EILDRLQGAFQQSCRVLVV 404
           GDH  L GF++   ILD +Q +F    R L++
Sbjct: 280 GDHHLLRGFDIYDIILDSIQESFSYVNRFLIL 311


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 133 IHNMEYSNKNFPELKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEV 279
           I+  EY+ + FPE  N RL+   L   +++  V + ++   Y  EF+E+
Sbjct: 510 IYTFEYAKRKFPEALNSRLVTDFLNIFLERGSVQLFKEI--YQLEFREM 556


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 431 STVMPSACGITRISLNIIDASKCSYLLSGCSVTSQANSGVRQTV 300
           S ++   CG+    +++++A KC YL+   S  + +   ++Q++
Sbjct: 438 SAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAACSPDQLKQSL 481


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 719  VRRQRSLWTSLGYFSSHSFVLDIVLLPPPSSMYPNSVNGAPV---KPIKGTLPSILCLVS 549
            V R  S  +     SSH    D+  LPPPS+      N AP+    P++   PS+  + S
Sbjct: 826  VPRTTSYTSPYATTSSHITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRS 885

Query: 548  VIAFPT*SNLETAPSGWRPSIS 483
               FP  S+ + A      S+S
Sbjct: 886  --PFPGASSAQPAAMSRTSSVS 905


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 362 SYLLSGCSVTSQANSGVRQTVKKSCLTRTS*N 267
           +YLL   SV+   ++G  +TVKKS  +  S N
Sbjct: 110 NYLLPNNSVSDLTSTGSSETVKKSTYSEKSGN 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,825
Number of Sequences: 5004
Number of extensions: 70122
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)