Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5m07
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 94 1e-19
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225... 81 7e-16
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168... 78 7e-15
04_03_0410 - 15569740-15570213 29 5.3
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 28 7.0
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 7.0
11_06_0298 - 22072391-22073863 28 9.2
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960 28 9.2
04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073 28 9.2
02_05_0739 + 31401372-31402371,31402667-31402719 28 9.2
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 93.9 bits (223), Expect = 1e-19
Identities = 48/146 (32%), Positives = 83/146 (56%)
Frame = +1
Query: 319 ELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGL 498
+L E++LQP + ++ D I+FSDIL + + ++ G GPV PL+T + ++ +
Sbjct: 913 DLVVEISLQPWKVFKP-DGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEV 971
Query: 499 QPEGAVSRLDYVGKAITLTRHKIDGKVPLIGFTGAPFTLFGYMLEGGGSKTMSKTKEWLE 678
+ + YVG+A+ + R +++ + ++GF GAPFTL Y +EGG SK SK K+
Sbjct: 972 REFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAF 1031
Query: 679 KYPKDVHRLLCLLTNVIIDYVVMQVE 756
P+ +H LL T + +Y+ Q +
Sbjct: 1032 SEPEILHNLLQKFTTSMANYIKYQAD 1057
>01_05_0741 -
24821208-24821220,24821476-24821711,24822276-24822560,
24822790-24822850,24823399-24823463,24823571-24823959,
24824059-24824188
Length = 392
Score = 81.4 bits (192), Expect = 7e-16
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Frame = +1
Query: 187 LLRAALGKS-VDKVPVWVMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRY 360
L+RAA G+ + + P W+MRQAGRY+ E+Q + +H F T EL E+TLQP R +
Sbjct: 48 LVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRAF 107
Query: 361 EHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGK 540
D I+FSDIL A+G+ ++ GPV P+++ ++ L P +L +VG+
Sbjct: 108 AP-DGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPID-FEKLRFVGE 165
Query: 541 AITLTRHKI 567
++ + R ++
Sbjct: 166 SLKILRTEL 174
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +1
Query: 565 IDGKVPLIGFTGAPFTLFGYMLEGGGSKTMSKTKEWLEKYPKDVHRLLCLLTNVIIDYVV 744
IDG+ L+GF GAP+T+ Y++EGG + T + K P + LL L + I +Y++
Sbjct: 216 IDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLADAISEYII 275
Query: 745 MQV 753
QV
Sbjct: 276 YQV 278
>03_02_0945 -
12614658-12614909,12615200-12615325,12616684-12616872,
12617059-12617169,12617629-12617744,12617861-12617966
Length = 299
Score = 78.2 bits (184), Expect = 7e-15
Identities = 42/126 (33%), Positives = 71/126 (56%)
Frame = +1
Query: 319 ELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGL 498
+L E++LQP + + D +I+FSDIL + + ++ G G V PL+T + ++ +
Sbjct: 94 DLVVEISLQPWKVFTP-DGAILFSDILTPLPRMNIPFDIVKGKGSVIFDPLRTAAAVNEV 152
Query: 499 QPEGAVSRLDYVGKAITLTRHKIDGKVPLIGFTGAPFTLFGYMLEGGGSKTMSKTKEWLE 678
+ + YVG+A+ + R +I+ + ++ F GAPFTL Y +EGG SK SK K+
Sbjct: 153 REFVPEEWVPYVGQALNILREEINNEATVLSFVGAPFTLASYCVEGGSSKNFSKIKKMAL 212
Query: 679 KYPKDV 696
P+ V
Sbjct: 213 SEPEIV 218
>04_03_0410 - 15569740-15570213
Length = 157
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 521 LETAPSGWRPS-ISDGV*SGLGNTGPTPGCISTVMPSACGITRISLNIIDASK 366
L GW S +D +GLG PTP C+ + + + +L + DA +
Sbjct: 51 LRRCSGGWGCSGEADPASTGLGRADPTPPCLGSDAGNRVAVAAAALRVSDAGE 103
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +1
Query: 250 GRYLPEFQEVRVKHDF-FTVCRTPELACE-----VTLQPLRRYEHLDASIIFSDILVIP 408
GR+L + VK DF F+ + + E V+L RYE+L A IFS +L++P
Sbjct: 294 GRHLLSYMTSHVKMDFIFSSFKNGDSRKECAFYLVSLPVPFRYEYLMAETIFSQLLLLP 352
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 340 LQPLRRYEHLDASIIFSDILVIPQ-ALGMTVEMHPGVGPVFPKPLQTPSE 486
++PLR E L+A I LV+PQ +L + V + PV P + P+E
Sbjct: 170 IEPLRTLEPLEAQQISLPHLVVPQISLQLPVVLQSCAIPVAPIGVMQPTE 219
>11_06_0298 - 22072391-22073863
Length = 490
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 355 RYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFP 462
RY DA ++ S V P A + PGV PVFP
Sbjct: 217 RYRDADAILVNSFDAVEPDAARVLRHPKPGVPPVFP 252
>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
Length = 376
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 722 LVRRQRSLWTSLGYFSSHSFVLD 654
L+ + R LW +GY+ HSFV+D
Sbjct: 119 LIHKARFLWLDVGYY--HSFVID 139
>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
Length = 391
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 280 GLPEILVNIFQLVALPKQGLCQHFFLKLLEVVYHFS 173
G+ EILV L A +CQ+ L E ++HFS
Sbjct: 297 GIREILVQWVDLSAEEASWVCQYNGLNFAECIHHFS 332
>02_05_0739 + 31401372-31402371,31402667-31402719
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 391 DILVIPQALGMTVEMHPGVGP---VFPKPLQTPSEIDGLQPEGAVSRLDYVGKAITL 552
D+L + AL TV G+ P V+ TPSE+ P + D G+ ITL
Sbjct: 199 DLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRMIFDQKDEEGREITL 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,780
Number of Sequences: 37544
Number of extensions: 422837
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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