Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m07
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    35   0.054
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    33   0.29 
Z71178-9|CAA94883.1|  577|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    30   1.5  
Z77656-4|CAH04701.1|  536|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   6.2  
Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical p...    28   8.2  
U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
 Frame = -3

Query: 551  SVIAFPT*SNLETAPSGWRPSISDGV*S-GLGNTGPT----PGCISTVMPSACGITRISL 387
            S +  P+  +  +A S  +P  S    + G   +GPT     G  ST   S  G T ++ 
Sbjct: 915  STVTQPSAFSSTSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVAT 974

Query: 386  NIIDASKCSYLLSGCSVTSQANSGVRQTVKKSCLTRTS*NSGKYLPACRITQTGTLSTLF 207
             +   S         +V SQ++S V  TV  S  T    +S    P C    +G ++T+F
Sbjct: 975  TVTQGSSTEGNTGSTTVNSQSSS-VASTVASS--TSNIVSSTSQAPTCASPYSGKIATVF 1031

Query: 206  PKAARSSLSFFN 171
              +A S+ +  N
Sbjct: 1032 ELSANSATNVVN 1043


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
 Frame = -3

Query: 617  NSVNGAPVKPIKGTLPSILCLVSVIAFPT*SNLETAPSGWR--PSISDGV*SGLGNTGPT 444
            ++V          T+P+     S +  P+ S+  +  S  +  PS S    +G   +GPT
Sbjct: 1535 STVGATQTSVSSSTVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPS-STAANTGSSTSGPT 1593

Query: 443  ----PGCISTVMPSACGITRISLNIIDASKCSYLLSGCSVTSQANSGVRQTVKKSCLTRT 276
                 G  ST   S  G T ++  +   S      SG +  +  +S V  TV  S  T  
Sbjct: 1594 VATTQGSSSTQTNSNTGSTTVATTVTQGSSTGGN-SGSTTVNFQSSSVASTVASS--TAN 1650

Query: 275  S*NSGKYLPACRITQTGTLSTLFPKAARSSLSFFN 171
              +S   +P C    +G ++T+F   A S+ +  N
Sbjct: 1651 IESSTTPIPTCASPYSGKIATVFELNANSATNIVN 1685


>Z71178-9|CAA94883.1|  577|Caenorhabditis elegans Hypothetical
           protein B0024.11 protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 619 GYMLEGGGSKTMSKTKEWLEKYPKDVHRLLC 711
           G ++  G +K+  K K W EK PK+ H  +C
Sbjct: 127 GILVSHGHTKSSRKRKLWDEKVPKECHFTIC 157


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 355  RYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEID 492
            R + +D   IF DI   P ++GM   +HP V   F     TP  ++
Sbjct: 1256 RPKFVDVVEIFQDIQDDPASVGMPFPIHPAVRATFAHSQSTPVSVE 1301


>Z77656-4|CAH04701.1|  536|Caenorhabditis elegans Hypothetical
           protein F07B10.5 protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 468 WFRKYWTDSRVHFNS 424
           +FR+ WTD R+HFN+
Sbjct: 113 YFRQKWTDDRLHFNN 127


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +1

Query: 181 DRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEVTLQPLRRY 360
           D L+R       D +PV  +RQ          + VK     +   PE   E  L+PL + 
Sbjct: 391 DGLMRKMTSPHYDLLPVPEVRQCLSLYHGLISIAVKTGDLNLLLEPERIYEYVLEPLIQT 450

Query: 361 EHLDASIIFSDILV 402
             L A+ + SDI V
Sbjct: 451 VQLSATRLKSDIEV 464


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 382 IFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEID 492
           ++ +  + P  L + V+  P  GP  P P Q P++ID
Sbjct: 171 VYENNPIAPSELNVQVKRAPPQGPPPPPPPQAPADID 207


>Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical
           protein R07E5.4 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -3

Query: 407 GITRISLNIIDASKCSYLLS---GCSVTSQANSGVRQTVKKSCLTRTS*NSGKYLPACRI 237
           G T   LN +     SY      G     Q  + +R+   K CL+R S N+ + L  C  
Sbjct: 78  GATECDLNRLQNCAISYFPRRHLGLVTCLQGLTTLREGFSK-CLSRLSPNTQRKLIECAT 136

Query: 236 TQTGTL 219
           TQTG L
Sbjct: 137 TQTGEL 142


>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 145 EYSNKNFPELKNDRLLRAALGKSVDK-VPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPE 321
           +Y     P LKN  L+     +S+ +     V R  G   P  Q++R+       C TP 
Sbjct: 268 DYQKNRDPVLKN--LIPRRWPRSIQEPTEAPVHRHMGAVYPPSQQIRMGRPICFRCLTPI 325

Query: 322 LACEVTLQPLRRYE 363
           L  +  LQ   +YE
Sbjct: 326 LLSQNVLQLAHQYE 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,792
Number of Sequences: 27780
Number of extensions: 387028
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)