Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m07
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.77 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 407 GITRISLNIIDASKCSYLLSGCSVTSQANSGVRQTVKKSCLTR 279
           GI  +   +ID +    L+S CS  S+ N  ++ +    C+++
Sbjct: 83  GIKAVMELLIDENSVKQLVSDCSTISEENPHLKASKLVQCVSK 125


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 468 WFRKYWTDSRVHF 430
           +FR++WTD R+ F
Sbjct: 62  YFRQFWTDPRLAF 74


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 468 WFRKYWTDSRVHF 430
           +FR++WTD R+ F
Sbjct: 62  YFRQFWTDPRLAF 74


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 468 WFRKYWTDSRVHF 430
           +FR++WTD R+ F
Sbjct: 1   YFRQFWTDPRLAF 13


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 465 FRKYWTDSRVHFNSHAECLWY 403
           FR+ W D R+ FN     L Y
Sbjct: 86  FREQWLDERLRFNDFGGRLKY 106


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 465 FRKYWTDSRVHFNSHAECLWY 403
           FR+ W D R+ FN     L Y
Sbjct: 86  FREQWLDERLRFNDFGGRLKY 106


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 127 SFIHNMEYSNKNFPELKNDRLLRAALGKSVDKVPVWVMRQAGRYLP 264
           S  +N +YSN N     N +L       +++++PV V    G + P
Sbjct: 84  SLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPP 129


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 468 WFRKYWTDSRVHF 430
           +FR+ W DSR+ F
Sbjct: 88  YFRQSWRDSRLSF 100


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 468 WFRKYWTDSRVHFNSHAECL 409
           +FR+ W D R+ F    E L
Sbjct: 56  YFRQSWVDRRLAFQGGKETL 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,407
Number of Sequences: 438
Number of extensions: 4997
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)