Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m06
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   2.2  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   3.9  
SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual        26   6.7  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.9  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   8.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.9  

>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 605 TIPYLCYYAYVDFICNFL 552
           T+P L +Y   DF+CN+L
Sbjct: 356 TVPILLFYGENDFLCNYL 373


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 587 YYAYVD-FICNFLLIEQNLHRRRRCSDMK 504
           Y + VD  I +F+L  +NLHR+R  SDM+
Sbjct: 158 YGSNVDSLITSFVLTCKNLHRKRYSSDME 186


>SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 341 IIGIFNST*CYSKCYVFEDSRIFNRLQKKEEAVISTVIFGAMSELYCN*EQMSMFSYQNN 520
           ++G+  S+ C    ++   SR F+ +QK EE  +  + F        N  ++SM + + N
Sbjct: 12  VLGVVASSLCNKNNHL-NRSREFSVIQKDEELNVLEINFNDFYRTTLNVGELSMSTRKTN 70

Query: 521 VC 526
            C
Sbjct: 71  NC 72


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 104 TILYFWNLFIARTRYMSGYFDSPIIAVASPIKKDV 208
           +I   + L++ +   M+ ++  PI+A+  PIKK +
Sbjct: 97  SIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTI 131


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 21  HNKTDCTFLHKINILLFYLEPLLFKRPKLYYISGIY 128
           H K D  ++ K N+ + ++ P+  + PK+   + +Y
Sbjct: 523 HKKDDTFWVPKANVFINFISPIARRSPKVSVSTTLY 558


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 305  LCNTLRN---CVHPYIIGIFNST*CYSKCYVFEDSRIFNRLQKKEEAV 439
            LC  L N    +H  I G+ ++    + C +   + I+++L+KKEEAV
Sbjct: 960  LCYNLLNESLSLHEQIYGVLHTEVARAYCQL---AMIYHQLEKKEEAV 1004


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 203 DVSLDCLNSHFMPNATSQ 256
           D   D LNSHF PN   Q
Sbjct: 15  DADADILNSHFAPNPRGQ 32


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 QRNAILNVTFSKIAAFLTDFKKKRRL 437
           +RNA+L V F+  +A +  F  +RRL
Sbjct: 765 RRNALLRVIFNSFSARIRGFLTRRRL 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,627
Number of Sequences: 5004
Number of extensions: 58258
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)