Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m06
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904...    28   9.3  
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722...    28   9.3  

>03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,
            9041608-9041802,9041905-9042153,9042525-9042672,
            9042673-9042779,9043311-9043475,9044506-9045948
          Length = 1273

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 371  YSKC-YVFEDSRIFNRLQKKEEAVISTVIFGAMSELYCN*EQMSMF 505
            Y+KC  V E  R+F+++ ++     +++IFG  +  +C  E + +F
Sbjct: 1071 YAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQ-EAVGLF 1115


>02_05_0729 -
           31271566-31271730,31271799-31271933,31272210-31272284,
           31273003-31273068,31273154-31273222,31273303-31273377,
           31273518-31273628,31273947-31274009,31274064-31274453
          Length = 382

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 532 CKFCSIRRKLHIKSTY 579
           CKFC+I+RK H+ S++
Sbjct: 320 CKFCAIKRKGHLPSSF 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,245
Number of Sequences: 37544
Number of extensions: 326533
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)