Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m05
         (312 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6NP51 Cluster: Uncharacterized protein CCDC57; n=3; Th...    37   0.076
UniRef50_Q2TAC2 Cluster: Coiled-coil domain-containing protein 5...    37   0.076
UniRef50_Q4SN85 Cluster: Chromosome 8 SCAF14543, whole genome sh...    32   2.2  
UniRef50_A2WKC0 Cluster: Putative uncharacterized protein; n=4; ...    32   2.2  
UniRef50_A4HUQ7 Cluster: Chromosome 10; n=6; Trypanosomatidae|Re...    32   2.2  
UniRef50_A2ZX76 Cluster: Putative uncharacterized protein; n=3; ...    31   5.0  
UniRef50_A0DWW4 Cluster: Chromosome undetermined scaffold_67, wh...    30   8.7  
UniRef50_P45458 Cluster: Malate synthase, glyoxysomal; n=3; core...    30   8.7  

>UniRef50_A6NP51 Cluster: Uncharacterized protein CCDC57; n=3;
           Theria|Rep: Uncharacterized protein CCDC57 - Homo
           sapiens (Human)
          Length = 1019

 Score = 37.1 bits (82), Expect = 0.076
 Identities = 20/65 (30%), Positives = 40/65 (61%)
 Frame = +1

Query: 118 LKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQDKIDLVRV 297
           L+ +K+   +++ SL  A + T +E +  +++   E+ D  A++ AR  DL+DK+  V++
Sbjct: 214 LEALKEAGAKAAESLQRA-EATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQL 272

Query: 298 LRKKK 312
            RKK+
Sbjct: 273 TRKKE 277


>UniRef50_Q2TAC2 Cluster: Coiled-coil domain-containing protein 57;
           n=11; Eutheria|Rep: Coiled-coil domain-containing
           protein 57 - Homo sapiens (Human)
          Length = 916

 Score = 37.1 bits (82), Expect = 0.076
 Identities = 20/65 (30%), Positives = 40/65 (61%)
 Frame = +1

Query: 118 LKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQDKIDLVRV 297
           L+ +K+   +++ SL  A + T +E +  +++   E+ D  A++ AR  DL+DK+  V++
Sbjct: 214 LEALKEAGAKAAESLQRA-EATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQL 272

Query: 298 LRKKK 312
            RKK+
Sbjct: 273 TRKKE 277


>UniRef50_Q4SN85 Cluster: Chromosome 8 SCAF14543, whole genome shotgun
            sequence; n=2; Euteleostomi|Rep: Chromosome 8 SCAF14543,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 2188

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 118  LKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQ 273
            L L +D     S+ L G L C R  +  D+    PE +DQ+A  E RC D +
Sbjct: 1432 LALQEDDESSGSAVLRGELHCQRFSQAGDLHLW-PEENDQWASPERRCRDTE 1482


>UniRef50_A2WKC0 Cluster: Putative uncharacterized protein; n=4;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 553

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 121 KLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDD 267
           +L  D   R + S+AG LD +R    LD+ AS+ ++ DQF L    C +
Sbjct: 64  ELRSDVAIRGADSVAGRLDISR----LDVSASLDQICDQFGLPSGICGE 108


>UniRef50_A4HUQ7 Cluster: Chromosome 10; n=6; Trypanosomatidae|Rep:
           Chromosome 10 - Leishmania infantum
          Length = 275

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  CLFKH*HLAVELCVLCKFQVIMGDCLKLVKDK 138
           C+  H  +  E+C  CK QV+  DC K ++ +
Sbjct: 225 CMLCHNRICTEICYPCKHQVLCKDCAKSIRGR 256


>UniRef50_A2ZX76 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 501

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 85  LCKFQVIMGDCLKLVKDKRHRS---SSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEA 255
           LC+F V+    LK +  K HRS   +  +A  L+  +SE +L  RAS P+V  Q  L+E 
Sbjct: 439 LCQFLVMNARALKRMSIKYHRSLYKTEHVATVLEAVQSELRLWPRAS-PDV--QLELSEI 495

Query: 256 RC 261
            C
Sbjct: 496 DC 497


>UniRef50_A0DWW4 Cluster: Chromosome undetermined scaffold_67, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_67,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 421

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 112 DC-LKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQ 273
           DC  KLVK++ H  S+ L   +D     + +  +  +P+V  +F L    CD+ +
Sbjct: 207 DCHQKLVKEEIHLVSNELLPQIDIEPYNEPICTKCKLPQVAHKFKLFSNACDNAE 261


>UniRef50_P45458 Cluster: Malate synthase, glyoxysomal; n=3; core
           eudicotyledons|Rep: Malate synthase, glyoxysomal -
           Glycine max (Soybean)
          Length = 564

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 97  QVIMGDCLKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVD 231
           +++  D LK V D +    + +  AL+C R  KK     ++PE D
Sbjct: 35  KILTKDALKFVADLQREFRNHIKYALECRREAKKKYNEGALPEFD 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,075,935
Number of Sequences: 1657284
Number of extensions: 4158393
Number of successful extensions: 9753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9753
length of database: 575,637,011
effective HSP length: 80
effective length of database: 443,054,291
effective search space used: 10190248693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)