Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m05
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   0.65 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   1.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   3.5  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    24   4.6  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    24   4.6  
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    24   6.1  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    24   6.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   6.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   8.1  

>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 47  YSNISTSPLSCVCYVNFKL 103
           + N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 ASIPEVDDQFALAEARCDDLQDKIDLVRV-LRKKK 312
           +S   + + +A+ +A+CD+  D+I ++   L K+K
Sbjct: 338 SSYVHLQEDYAILQAKCDEFADRIQVLTADLEKEK 372


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -1

Query: 285 IDFVLQIITTCFRQRKLIIY 226
           ID V++ +T+C++ +KL+++
Sbjct: 441 IDNVVKFLTSCYKLKKLVLH 460


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 2   ISVPPFLYLIIKSFVYSNI 58
           I++PP +Y+ + S +Y N+
Sbjct: 114 IALPPSVYVTVSSHIYENL 132


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 130 KDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFA 243
           K+K+  +++    A D T ++    I A +P V+D+FA
Sbjct: 100 KEKQLNTANEPHEANDQTSAQSSKLIEAQLPTVEDRFA 137


>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 197 FFSERVQSKAPARLLELLCRLSFTNFKQSPIIT 99
           FF++   S  P ++  +  R SF  FK  P++T
Sbjct: 151 FFTKSDGSDDPTQIAYIGLRGSFVPFKGDPVVT 183


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 17  FLYLIIKSFVYSNISTSPL 73
           +L L+ K  +YS+I T+PL
Sbjct: 217 YLVLLAKGGIYSDIDTAPL 235


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 295 LLLNRFCPANHHNVLPPAQIDHLLPVSKLLCPTSFLNEYNLK 170
           +L NR CP++   +L    +    P    +    F  E NLK
Sbjct: 1   MLCNRTCPSSDCGILCNHSVPSFPPFHSSVANIHFTKENNLK 42


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 259 NVLPPAQIDHLLPVSKLLCPTSFLNE 182
           NVLPP Q + +L + + L P+S+  E
Sbjct: 396 NVLPPDQKERILQIRQAL-PSSYKTE 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,963
Number of Sequences: 5004
Number of extensions: 19049
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)