Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5m05
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 32 0.082
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 31 0.14
11_06_0533 + 24734177-24735787 29 0.58
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 28 1.8
04_01_0051 - 542615-544066 28 1.8
08_02_0786 + 21198247-21198921 26 5.4
07_01_0764 + 5860571-5860780,5860865-5860996,5861082-5861252,586... 26 7.2
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 25 9.5
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199... 25 9.5
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 25 9.5
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 32.3 bits (70), Expect = 0.082
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 121 KLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDD 267
+L D R + S+AG LD +R LD+ AS+ ++ DQF L C +
Sbjct: 64 ELRSDVAIRGADSVAGRLDISR----LDVSASLDQICDQFGLPSGICGE 108
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 154 SSLAGALDCTRSEKKLDIRASIP-EVDDQFALAEARCDDLQDKID 285
+ + GA D R ++ ++R +P E DD+ A +C LQD+ID
Sbjct: 1636 NGVLGAGDGVRMPRRTELRDLVPIERDDKLARLLEQCSKLQDRID 1680
>11_06_0533 + 24734177-24735787
Length = 536
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +1
Query: 148 SSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQDKID 285
S S LA A T +EK +R+ + E+D++ +AEA+ ++LQ +I+
Sbjct: 310 SKSELAAAK--TEAEK---LRSEVAEIDEKHRMAEAKVNELQIEIE 350
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 61 HLAVELCVLCKFQVIMGDCLKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQF 240
+ +++ C F + +C+K +K R +S A A + RS + +DD
Sbjct: 397 YCSIDPTTCCSFSNLAANCVKHLKHSRQDQENSSAQANESDRSTVPNEEDDVFSGLDDVP 456
Query: 241 ALAEARCDDLQDKIDLVR 294
A D+ D+ DL++
Sbjct: 457 VEARTTLDNNIDRDDLLK 474
>04_01_0051 - 542615-544066
Length = 483
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 RSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARC-DDLQDKIDLVRVLRKK 309
RSSSS AG T + +S+ +F E RC DD ++D++ LR +
Sbjct: 390 RSSSSSAGKNKATTAAAAAVSSSSVEVAVKRFTRDENRCYDDFLAEVDIINRLRHR 445
>08_02_0786 + 21198247-21198921
Length = 224
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 115 CLKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARC 261
C K +D+ + SS A D +E++ A+ D+Q AL + C
Sbjct: 37 CSKCYRDQLKAAPSSPPAAPDLVANEEEEASTAAAAAADEQLALCSSGC 85
>07_01_0764 +
5860571-5860780,5860865-5860996,5861082-5861252,
5861345-5861365,5861457-5861972,5862008-5862301
Length = 447
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +1
Query: 64 LAVELCVLCKFQVIMGDCLKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFA 243
+A + + F V+M L V K + ++SSL D R + L+ + ++ +V +
Sbjct: 1 MACNVLLFSAFVVVMSFFLCSVHAKVNMNASSLTNGDDSLRGKSSLESKKAVFDVRKHGS 60
Query: 244 LAEARCDD 267
+ + DD
Sbjct: 61 YGDGQHDD 68
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 64 LAVELCVLCKFQVIMGDCLKLVK 132
++VE CK Q +G CLK VK
Sbjct: 563 VSVEFSCPCKLQACIGVCLKKVK 585
>02_05_1155 +
34519080-34519313,34519622-34519665,34519901-34519973,
34520895-34521043,34521698-34521859,34522301-34522360,
34522716-34522776
Length = 260
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 205 CPTSFLNEYNLKLQQDY*NFCV 140
CP S +Y LKL Y ++CV
Sbjct: 239 CPRSLEKKYTLKLLWSYLHYCV 260
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 214 SIPEVDDQFALAEARCDDL-QDKIDLVRVLRKKK 312
+IP DD FA E +DL ++K L R L K +
Sbjct: 401 TIPGKDDDFAALEQLIEDLTKEKFALQRTLEKSQ 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,263,284
Number of Sequences: 37544
Number of extensions: 113370
Number of successful extensions: 242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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