Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m05
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 17  FLYLIIK-SFVYSNISTSPLSCVCY 88
           F Y IIK ++ Y N+  +P+SC  Y
Sbjct: 107 FTYDIIKDTYSYDNVDGTPISCTYY 131


>Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical
           protein K08G2.5 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 7   CTTIFIFNN*KFCLFKH*HLAVELCVLCKFQVIM 108
           C    +FNN +F L     L   +C+LC   V++
Sbjct: 174 CVPSEVFNNPQFFLVDLTGLKTMICILCSLSVLL 207


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/55 (21%), Positives = 31/55 (56%)
 Frame = +1

Query: 118 LKLVKDKRHRSSSSLAGALDCTRSEKKLDIRASIPEVDDQFALAEARCDDLQDKI 282
           L++  +++ + + ++  A+D    EK  D+++    + ++    EA+ +DL D+I
Sbjct: 294 LEIEVEEQKKLNEAVTHAMDPQMKEKYEDLKSEAKLLRERVVEMEAKNEDLDDRI 348


>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 160 LAGALDCTRS-EKKLDIRASIPEVDDQFALAEARC 261
           L GA   T + EKKL I A     D  F LAE  C
Sbjct: 131 LRGAETITETIEKKLGIHAGETTKDGLFTLAEVEC 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,548,360
Number of Sequences: 27780
Number of extensions: 108845
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)