Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m05
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 YRK*MINLRWRKHVVMICR 274
           YR   +N   R+H+++ C+
Sbjct: 169 YRNGTVNYLMRRHLILSCQ 187



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 256 VLPPAQIDHLLPVSKLLCPTSFLNEYNLKLQQDY 155
           +LPP Q    + VS LL   +  +E +LK + ++
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEF 111


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 YRK*MINLRWRKHVVMICR 274
           YR   +N   R+H+++ C+
Sbjct: 169 YRNGTVNYLMRRHLILSCQ 187



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 256 VLPPAQIDHLLPVSKLLCPTSFLNEYNLKLQQDY 155
           +LPP Q    + VS LL   +  +E +LK + ++
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEF 111


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 YRK*MINLRWRKHVVMICR 274
           YR   +N   R+H+++ C+
Sbjct: 220 YRNGTVNYLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 218 YRK*MINLRWRKHVVMICR 274
           YR   +N   R+H+++ C+
Sbjct: 169 YRNGTVNYLMRRHLILSCQ 187



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 256 VLPPAQIDHLLPVSKLLCPTSFLNEYNLKLQQDY 155
           +LPP Q    + VS LL   +  +E +LK + ++
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEF 111


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 DDQFALAEARCDDLQDKIDLVRVLR 303
           ++ +ALA A CD   D +   + LR
Sbjct: 358 EETYALAPAGCDLTIDNLRKAKYLR 382


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 255 CFRQRKLIIYFRYR 214
           CF   K II F YR
Sbjct: 82  CFNDLKFIIEFVYR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,448
Number of Sequences: 438
Number of extensions: 1302
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)