Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5m04
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   3.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   3.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.6  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   9.6  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   9.6  

>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/97 (19%), Positives = 44/97 (45%)
 Frame = +2

Query: 296 SNFTNPYSSSIINHQKGKIPQEEINKARETYFRIFNATMKPTSSIGELFPIVPAYTNVSR 475
           S+     S  I+ + +G +P  +I++  +    I +A++ P   I  +      + ++  
Sbjct: 67  SSIEKKKSELIVRNSEG-LPVMDIHEEVDKDGNIISASVAP-QRISSVIDYADVFRSLPG 124

Query: 476 INNIHSNCGEDTSAQNLETARSLVSALLQQINFRPRE 586
             NI +    DTS++  E +   ++   + IN++  E
Sbjct: 125 FKNIENGGNRDTSSRIEELSEEEINDSTKNINYKAPE 161


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 101 VKFILSSFTCLTFCFKTYQVHQINES 178
           VKF  S+  C T  FKT QV+Q+ E+
Sbjct: 415 VKFSDSTMLCATTLFKTPQVYQLFEN 440


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 509  TSAQNLETARSL---VSALLQQINFRPRERIKRKSIKGRSQIKRFQK 640
            TS  N+  + S+   +S++     + PR+ I  K ++  S ++RF++
Sbjct: 1370 TSGMNMPISSSISAKISSIQNSTKYSPRKPIPAKDVRVSSLVRRFEE 1416


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 125 TCLTFCFKTYQVHQINESAYLVIAVP 202
           T  T CF +Y VH + +    +I VP
Sbjct: 422 TVQTVCFLSYLVHSLKQHGPFLIVVP 447


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 377 RETYFRIFNATMKPTSSIGELFPIVP 454
           RET F I N ++     IG L P+VP
Sbjct: 51  RETLFGIHNLSVASPFMIGSLQPLVP 76


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 INESAYLVIAVPD-FNDNNETRHVSETXXXXXXXXXKPKTSYKGSNFTNPYSSSI 328
           + E +YL    P  +  ++ ++  SET           K S +G NFT P S S+
Sbjct: 351 VEEISYLHYDEPSQYYFSSPSKLSSETTKVHRGCENTEKPSEEGKNFTTPLSDSV 405


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 515 AQNLETARSLVSALLQQINFRPRERIKR--KSIKGRSQIKRFQKNTD 649
           ++ +ETA   +  +   I  R R+R K+  K+   R  + +FQ NT+
Sbjct: 37  SEQIETAADAL--ITSNIGHRSRQRKKKTKKATNSRKPLSKFQSNTE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,959
Number of Sequences: 5004
Number of extensions: 54763
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)