Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l24
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   3.0  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   9.1  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 337 LYSGNLSGLRLSFAFISFTPKRSLKHLEFLSQNNSH 230
           L+SGN SG  +   F+S  P +SL   E LS+ ++H
Sbjct: 40  LFSGNESGSLMQKCFVSKIPNKSLLPTE-LSKISTH 74


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 320 VWPASELRIYFFYPKKVTQTFRIPFAK*FPLQA 222
           +WP  ELR +  +PK +  + R    K  P QA
Sbjct: 13  LWPKDELRPWLSFPKTLDTSIRARLQKMPPQQA 45


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 RSSDAGQTNFQSIGDEDSINFQPSPNFKHMKKYL 399
           +++  G   F+ I +ED+ ++ PSP  K   + +
Sbjct: 606 KNTKFGYQEFEGIDEEDAQDYSPSPLIKSFNELM 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,765
Number of Sequences: 5004
Number of extensions: 45845
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)