Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5l18
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.1
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 30 1.5
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 29 3.5
08_01_0657 + 5674907-5674993,5675615-5676583 29 4.6
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 29 4.6
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 28 6.0
04_03_0141 + 11767781-11767880,11767953-11769262 28 6.0
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 6.0
11_06_0610 - 25449085-25453284 28 8.0
11_06_0255 + 21723913-21725304 28 8.0
07_03_0571 - 19602755-19603831 28 8.0
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 562 GVRAALGA*PWCALGAGRERPESPSCAGSDPGRSVAGSRRETRIPLPSQLRANY 401
G+ A G W A G RE E AG+D G+S++ ++ + + + L + +
Sbjct: 388 GISATSGINGWVAEGTERENVEGRGEAGTDEGKSLSNAQVDLNLTMAGGLPSTH 441
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 406 WPEADWATECVSRAEILRLIYQGRFLHS 489
WPE D E + E +R +Y+GRFL S
Sbjct: 695 WPEVDALMEEMKNIEEVRDVYKGRFLRS 722
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 435 RVSRRDPATDLPGSLPAQLGDSGRSRPAPR--AHHGHAPSAA-RTPPGA*LSRSTMELKS 605
R+ RR+P+ P P +L P P + H+ S++ RTP A L +
Sbjct: 22 RLPRRNPSLPFPLRPPHRLSPFSAPPPEPHRLTYRTHSTSSSSRTPTAAGLLSPVISTSR 81
Query: 606 NAILVLCSYTLSLPSFFPV 662
I +L + LSL P+
Sbjct: 82 TLIFLLVASLLSLSGVRPL 100
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +3
Query: 450 DPATDLPGSLPAQLGDSGRSRPAPRAHHG-------HAPSAARTPPGA*LSR 584
+ A + GSL A G G S PRA HG AP R P GA L R
Sbjct: 4 EAARETKGSLAAAFGFLGTSGGEPRASHGEDGLPPVQAPPRRRLPLGAPLHR 55
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +2
Query: 332 PERRKSSSSVPSTRPATSHCTSTIIGPKLTGQRNACLAPRSCD*STRVASCTAR*LWALS 511
PE+R V +PA S C S IIG G R PR+ + +SC A L +
Sbjct: 80 PEKRPRYQDVDEEQPAASEC-SEIIG----GAR-----PRAAEVEVSESSCLASVLESYL 129
Query: 512 ACP 520
ACP
Sbjct: 130 ACP 132
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 429 GMRVSRRDPATDLPGSLPAQLGDSGRSR--PAPRAHHGHAPSAARTPP 566
G + DP D P + + + SR P P +HH APS A PP
Sbjct: 41 GKMFNPNDPV-DNPEAFSSSIAAPSPSRAPPPPPSHHERAPSDAPPPP 87
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 486 QLGDSGRSRPAPRAHHGHAPSAARTPP 566
QLG R AP +H G + S+AR PP
Sbjct: 331 QLGAPHAPRAAPSSHPGASSSSARPPP 357
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 424 ATECVSRAEILRLIYQGRFLHSSVTLGALGLPLGRTTVMHLVPREHLPEPNS 579
A C A RLIY+GR L TL + G+ T +H+V R P P S
Sbjct: 757 AESCDVPAPQQRLIYKGRILKDEQTLASYGVETDHT--IHMV-RGAAPPPAS 805
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 453 PATDLPGSLPAQLGDSGRSRPAPRAHHGHAPSAARTPPGA*LSRSTMELKSNA 611
P + P +S S P P A GH PS + P + S T E K+++
Sbjct: 608 PKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASS 660
>11_06_0255 + 21723913-21725304
Length = 463
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 364 VDSAGDI-ALHVYDNWPEADWATECVS 441
+ S GD+ +LH + NWP W T +S
Sbjct: 437 LQSLGDVESLHAWRNWPSPIWITPSLS 463
>07_03_0571 - 19602755-19603831
Length = 358
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -2
Query: 387 CDVAGR-VDGTEDELFRLS 334
CD+ G VD TEDELFRL+
Sbjct: 234 CDINGVCVDATEDELFRLT 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,316,281
Number of Sequences: 37544
Number of extensions: 435125
Number of successful extensions: 1489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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