Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l13
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens ...    44   7e-04
AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA seq...    42   0.003
BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 5...    31   5.0  
AK027863-1|BAB55415.1|  612|Homo sapiens protein ( Homo sapiens ...    30   6.6  
AK001116-1|BAA91510.1|  273|Homo sapiens protein ( Homo sapiens ...    30   8.8  

>AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13898 fis, clone THYRO1001738, weakly similar to
           TUBULIN--TYROSINE LIGASE (EC 6.3.2.25). ).
          Length = 744

 Score = 43.6 bits (98), Expect = 7e-04
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +3

Query: 387 RWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPKK 560
           R    K   E A+KQ+K+F I+G  +P IR  +  RGWVEK   H  R  PT + P+K
Sbjct: 3   RLRNAKIYVERAVKQKKIFTIQGC-YPVIRCLLRRRGWVEKKMVH--RSGPTLLPPQK 57


>AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA
           sequence from clone RP3-355C18 on chromosome 22q13.3
           Contains a novel gene, a novel gene, the MLC1 gene for
           megalencephalic leukoencnovel protein (FLJ41993)).
          Length = 747

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
 Frame = +3

Query: 384 ERWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEK-----------YESHKVR 530
           +R+   +++ E A+K++K+F I G  +P +R A+  +GWVEK            E    R
Sbjct: 14  DRYKIARQLTEKAIKEKKIFSIYGH-YPVVRAALRRKGWVEKKFHFLPKVIPDVEDEGAR 72

Query: 531 -HPPTNVDPKKASGKELSKVERM--ILYKFMEHHSVDFLWTTKRDKYDW 668
            +  T    K+     L K + +  ++ + +++     LWT KRD  D+
Sbjct: 73  VNDDTCAKVKENQEMALEKTDNIHDVMSRLVKNEMPYLLWTIKRDIIDY 121


>BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 55A
           protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 572 FARRFFRIYVCWRMTYLMGFIFFYPASF 489
           FARRF   YV W + YL+G I    A +
Sbjct: 216 FARRFRATYVSWAIAYLLGLICLIRACY 243


>AK027863-1|BAB55415.1|  612|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14957 fis, clone PLACE4000009, weakly similar to
           MYOSIN HEAVY CHAIN, NONMUSCLE TYPE B. ).
          Length = 612

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = +3

Query: 171 QKFQKREGRTRSMA-----VMMELEESVSDSK-LHKE-STAKKDLRPSSAISFSKSDHGP 329
           +  +K EG  R +      V  E +E+VS  + L  E   A+ +L  ++      S+   
Sbjct: 174 ETLKKYEGEIRQLEEALVHVRKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLK 233

Query: 330 ETTSSTEQLRQYKSWVSNERWNELKKIAETAMKQ 431
           E +   EQLR+ K+ + NERW+ L K  E   K+
Sbjct: 234 EESEQKEQLRRLKNEMENERWH-LGKTIEKLQKE 266


>AK001116-1|BAA91510.1|  273|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10254 fis, clone HEMBB1000848. ).
          Length = 273

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 32/132 (24%), Positives = 54/132 (40%)
 Frame = +3

Query: 198 TRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWV 377
           ++++     + E +++S L   S  K +LR        K      TT     L     WV
Sbjct: 112 SKALLSKCRIREIITNS-LSDHSAIKLELR------IKKLTQNHTTTWKLNNLLLNDYWV 164

Query: 378 SNERWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPK 557
           +NE   E+K   ET   + + +      F    +A+  R ++    +HK R   + +D  
Sbjct: 165 NNEMKAEIKMFFETNENKDRAYQNLWDTF----KALCRRKFI-ALNAHKRRQRRSKIDTL 219

Query: 558 KASGKELSKVER 593
            +  KEL K ER
Sbjct: 220 TSQLKELEKQER 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,677,114
Number of Sequences: 237096
Number of extensions: 2005036
Number of successful extensions: 3652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3650
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)