Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l11
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    50   3e-07
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    44   1e-05
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    30   0.31 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.42 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   0.55 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    28   0.96 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    28   1.3  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.9  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    25   9.0  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 25/71 (35%), Positives = 40/71 (56%)
 Frame = +1

Query: 319 WQSKEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTER 498
           +QSK  + C+D      +LWICL   C ++GC    + H+  H+ + A HC  M + T+R
Sbjct: 258 FQSKCTVCCYD-----KDLWICLI--CGNIGCGRYHDAHAKQHYVDTA-HCYAMELETQR 309

Query: 499 IWCYSCEKEVH 531
           +W Y+ +  VH
Sbjct: 310 VWDYAGDNYVH 320


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = +1

Query: 274 CEHLNK---LVHVLGK-ELWQSKEALTCFDCGCPG---PNLWICLQPECHHVGCSEVKND 432
           C HL K   L H+ G     +      CF C        +  + L   C ++ C   ++D
Sbjct: 56  CSHLKKGVKLSHLKGNARALRDPSKHLCFICTTEKIKREDYELTLCANCGYLFCCNHESD 115

Query: 433 HSTFHHKNFATHCVHMNVSTERIWCYSCEKEVHI 534
           HS  H +    HCV +N+ T +  CYSC+ ++ I
Sbjct: 116 HSRKHFEKNKKHCVFVNIITLKCHCYSCDADIVI 149


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 439 TFHHKNFATHCVHMNVSTERIWCYSCEKEVHIRAAMAHSAS-PDSTT---ADGSVRI 597
           TFHH N   +C   +  +  I C   E  + + +  A   S P ST+   +DGSVR+
Sbjct: 319 TFHHTNNNMNCAEFSPDSTMIACGFQESYIRLWSIKADKKSLPKSTSVEDSDGSVRL 375


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 409 GCSEVKNDHSTFHHKNFATHC-VHMNVSTERIW--CYSCEKEVHIRAAMAHSASPDS 570
           GC+ +  D S     +  + C V ++VS   I   C+  E+ +H      H++SP+S
Sbjct: 177 GCAPIDLDDSIIKRDDLLSFCNVEVHVSPNAILNACWLSERNIHTDLYETHASSPNS 233


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 214 VNLFIYVCLYFLFKMEKGMTCEHLNKLVHVLGKELWQS 327
           +NLF    ++FL K  KG+T E +N L ++   + W+S
Sbjct: 440 INLFSSFMIFFLAKETKGLTLEEVNDL-YMSNIKPWES 476


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 397 CHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWCYSCEKEVH 531
           CH VGC      H    H    TH + ++V     +C+ C+  V+
Sbjct: 54  CHSVGCLW---GHHGEEHAMEHTHMIGVDVKNGHTYCFGCQDYVY 95


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = +1

Query: 271 TCEHLNKLVHVLGKELWQSKEALTCFDCGCPGPNLWICLQPECHHVGCSEVK------ND 432
           TC+H+  L     +    + +  TC  C     NLW+CL   C  + C   +      N 
Sbjct: 152 TCDHIINLPE--NETYVTNLDNATCSKCDL-AENLWMCLT--CGALSCGRKQYGGGGGNG 206

Query: 433 HSTFHHKNFATHCVHMNVST------ERIWCYSCEKE 525
           H+  H+ +   H + + + +        I+CYSC++E
Sbjct: 207 HALSHYDDTG-HPLAVKLKSISPDGQADIYCYSCDEE 242


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 427  NDHSTFHHKNFATHCVHMNVSTERIWCYSCEKEVHIRAAMAHSASPDSTT 576
            N  S  HH+  A H   +  ++E++   S E E    ++ AH AS  + T
Sbjct: 950  NSFSDIHHRKIAAHAAAITAASEKL-TPSIE-ETSYSSSKAHDASLSAAT 997


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +1

Query: 379 ICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWCYSCEKEVHIRAAMAHSA 558
           I L  E  ++  S+VK+  S+    NFA + +  + S++ ++ Y C  +  ++  M +S+
Sbjct: 207 ISLSQEKQNIPPSDVKSFFSSTE-PNFAFYSLPKDGSSKILFIYICPMQATVKHRMVYSS 265

Query: 559 S 561
           S
Sbjct: 266 S 266


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 79   LIPFHKNVSCKTKFIFSYLFLWKTKHSI 162
            ++ F   +S K  + FS+ F+W T H +
Sbjct: 3726 VVVFQHFISLKKSYSFSFNFIWSTFHQM 3753


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 433 DHFLLQSSQHDDTQAAGRSISSGRDSHSRNMSK 335
           D  L Q+ +    +A GRS  SGR+    N  K
Sbjct: 224 DRILKQAEERRSNRAVGRSNLSGREYFESNKDK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,505
Number of Sequences: 5004
Number of extensions: 62430
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)