Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5l11
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 50 1e-06
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 45 4e-05
01_01_1181 + 9410310-9411329 29 2.3
11_07_0010 - 27334177-27334337,27334479-27334560 29 4.0
09_02_0271 + 6540287-6540368,6540510-6540670 29 4.0
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 29 4.0
07_03_0125 - 13789150-13789419,13790116-13790166 28 5.3
05_01_0575 + 5112988-5114082 28 5.3
04_03_0638 - 18239494-18239565,18239883-18240002 28 5.3
12_01_0792 + 7244527-7244845,7245457-7245587 28 7.0
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 28 7.0
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 28 7.0
02_01_0517 + 3733921-3735012 28 7.0
07_03_1610 - 28131623-28131710,28132017-28132321,28132921-281331... 27 9.2
01_03_0106 - 12607995-12608327,12608863-12609063 27 9.2
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/70 (38%), Positives = 36/70 (51%)
Frame = +1
Query: 322 QSKEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERI 501
QSK TC C G NLWIC+ C VGC + H+ H K HC +++ T+R+
Sbjct: 245 QSKNP-TCSVCQTSG-NLWICII--CGFVGCGRYEEGHAIRHWKE-TQHCYSLDLETQRV 299
Query: 502 WCYSCEKEVH 531
W Y + VH
Sbjct: 300 WDYVGDSYVH 309
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 322 QSKEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTER- 498
Q E +C CG NLWIC+ C HVGC K H+ H K HC + + T++
Sbjct: 202 QEPEKSSCSVCGT-SENLWICVI--CGHVGCGRYKGGHAIEHWKE-TQHCYSLELETQKM 257
Query: 499 -IW 504
IW
Sbjct: 258 GIW 260
>01_01_1181 + 9410310-9411329
Length = 339
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 328 KEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWC 507
K+ CF CG G IC P+ H + + K+ H++ T V + S E++
Sbjct: 237 KQDQVCFKCGTRGHWSRICRTPK-HLIELYQEKHGKKKSEHESHFT--VEIQHSEEKMAA 293
Query: 508 YSCEKEVHIRAAMA 549
+ +K+V +A +A
Sbjct: 294 MNIDKQVDEKAVVA 307
>11_07_0010 - 27334177-27334337,27334479-27334560
Length = 80
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 391 PECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWC 507
P C V C+ N T HH + C+H N + E+ C
Sbjct: 37 PHCKIVACT---NKCRTHHHPKYTARCIH-NTNPEQCCC 71
>09_02_0271 + 6540287-6540368,6540510-6540670
Length = 80
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 391 PECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWC 507
P C V C+ N T HH + C+H N + E+ C
Sbjct: 37 PHCKIVACT---NKCRTHHHPKYTARCIH-NTNPEQCCC 71
>08_02_1312 + 26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 364 GPNLWICLQPECHHVGCSEV-KNDHSTFHHKNFATHCVHMNVSTERIWC-YSCEKEVHIR 537
G LW+ ++P VG E + T HH+++ T V +N + WC + +KE +
Sbjct: 960 GLPLWLEVEPS---VGLIEPGQTMEVTVHHEDYYTQEVFVNGVLQNCWCEVTRDKEAVLL 1016
Query: 538 AAMAHSASPDSTTADGSVR 594
+ S S ++ T +VR
Sbjct: 1017 VNVTGSTSTETITHRINVR 1035
>07_03_0125 - 13789150-13789419,13790116-13790166
Length = 106
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 259 EKGMTCEHLNKLVHVLGKELWQSKEALTCFDCGCP 363
++GM + N ++H K L ++ A CF CG P
Sbjct: 23 QEGMWLQEENDVLHAENKVLKEAMWANICFTCGSP 57
>05_01_0575 + 5112988-5114082
Length = 364
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 328 KEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWC 507
K+ CF CG G IC P+ H + + K+ H++ T V + S E++
Sbjct: 262 KQDQVCFKCGTRGHWSRICRTPK-HLIELYQEKHRKKKSEHESHFT--VEIQHSEEKMAA 318
Query: 508 YSCEKEVHIRAAMA 549
+K+V +A +A
Sbjct: 319 MHIDKQVDEKAVVA 332
>04_03_0638 - 18239494-18239565,18239883-18240002
Length = 63
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 256 MEKGM-TCEHLNKLVH-VLGKELWQSKE 333
+ GM +CEH +++ H VLGKE+W + E
Sbjct: 20 LASGMGSCEHRDEVGHCVLGKEIWATDE 47
>12_01_0792 + 7244527-7244845,7245457-7245587
Length = 149
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 444 PPQEFRHTLRSHE 482
PP EFRHTL+ H+
Sbjct: 97 PPHEFRHTLKEHD 109
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 499 FFQLKHSCERNVWRNSCGGMYCDHFLLQSSQHDDTQAAGRSISSGR 362
+++ K C R+ C + C H LLQ QH AA + GR
Sbjct: 54 YYKAKQRCYALQIRDYCCYLQCHHLLLQQQQH-GVAAARLKAAMGR 98
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 103 SCKTKFIFSYLFLWKTKHSINFCLRIKFSL-FTRLL*R--VNLFIYVCLYFLFK 255
+C LFL+ T N C+ +K+SL FT + R ++LF ++F F+
Sbjct: 106 ACLASLFVDPLFLYLTGTRQNMCIELKYSLAFTLSMIRSLLDLFYAAHIFFRFR 159
>02_01_0517 + 3733921-3735012
Length = 363
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +1
Query: 328 KEALTCFDCGCPGPNLWICLQPECHHVGCSEVKNDHSTFHHKNFATHCVHMNVSTERIWC 507
K+ CF CG G IC P+ H + + K+ H++ T V + S E++
Sbjct: 261 KQDQVCFKCGTRGHWSRICRTPK-HLIELYQEKHGKKKSEHESHFT--VEIQHSEEKMAA 317
Query: 508 YSCEKEVHIRAAMA 549
+K V +A +A
Sbjct: 318 MHIDKHVDEKAVVA 331
>07_03_1610 -
28131623-28131710,28132017-28132321,28132921-28133118,
28134016-28134183
Length = 252
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 472 VHMNVSTERIWCYSCEKEVHIRAAMAHSASPDSTTADGSV 591
V+ + R+ C C++ VH AA + +SPD+ DG V
Sbjct: 34 VYCRADSARL-CLPCDRHVH--AANTNQSSPDNGELDGEV 70
>01_03_0106 - 12607995-12608327,12608863-12609063
Length = 177
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 328 LTAIILSRVRGPVCLNVRMSFLFP 257
LTA+ILS V CLNVR L P
Sbjct: 26 LTAVILSTVFPSPCLNVRSPCLLP 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,193
Number of Sequences: 37544
Number of extensions: 369436
Number of successful extensions: 867
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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