Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l11
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.60 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 478 MNVSTERIWCYSCEKEVHIRAAMAHSASP 564
           M + T  IW   C   VH R+   H+ SP
Sbjct: 320 MILVTLSIWITVCVLNVHFRSPSTHNMSP 348



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 181 KFSLFTRLL*RVNLFIYVCL 240
           K+ LFT +L  ++++I VC+
Sbjct: 314 KYLLFTMILVTLSIWITVCV 333


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 454 NFATHCVHMNVSTERIWCYSCEKEVHIRAAMAHSASPDSTTADGSVR 594
           +F   C+ M     R++CY+   + H+++  A +  PD++ A   VR
Sbjct: 200 SFYVPCIVMLGIYCRLYCYA---QKHVKSIRAVTKLPDTSMAKSFVR 243


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 67 YRNFTIIVSLIVC 29
          Y N TI++ LI+C
Sbjct: 3  YNNLTIVIILIMC 15


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 508 YSCEKEVHIRAAMAHSASPDSTTADGSVRIGSVGLYAD 621
           Y C  +     A      P+STT +GS   GS G+ +D
Sbjct: 261 YQCAVKRKEEKAQKEKDKPNSTTMNGSP--GSGGIRSD 296


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  FHSIKMFPVRLSLFFPIYSYGKLNI 157
           F + + + +  +LF+P   YG  NI
Sbjct: 213 FRNSRSWRITNNLFYPYPPYGTFNI 237


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 380 IHKFGPGQPQSKHVKASFD 324
           +H+F  GQP   +  A+ D
Sbjct: 184 LHQFATGQPDLNYRSAALD 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,838
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)