Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l07
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   2.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    27   2.9  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   6.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   6.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   6.7  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   8.8  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   8.8  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
 Frame = +2

Query: 359  LSDKYIYIVKNANTTKEMLTSLEAIFERKTVCNKFYLK--RKLITMCYDDESNLQQFFLK 532
            L D ++ +    NT  E  + L+   E  T  N   +   +KL+    + ES + +   +
Sbjct: 799  LRDDHVNMQSQNNTLLESESKLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL-KE 857

Query: 533  FEGILS-EL----AAINVSVEVEDQICYLLSSLPKIYD-------QLITSIETMGSEKQL 676
              G LS +L    +++NV++   DQI   L+ L K YD       QL + ++++ +EKQL
Sbjct: 858  VNGKLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQL 917


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 359 DIVPKLILLVSHPDPSVSLLRIHCLITFLPA 267
           + + +L  LV   DP + LL I CL+T   A
Sbjct: 287 EYITQLFCLVRQFDPCIRLLSISCLVTLYKA 317


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 449 VCNKFYLKRKLITMCYDDESNLQQFFLKFEGILSELAAINVSVEVED 589
           V  K +L+R   +  ++   ++Q+FFL +  + ++LA+ N+   +ED
Sbjct: 99  VIPKSFLERLAESDDFEAVKSIQEFFLDYLVVNNDLASFNIPHIIED 145


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 362 SDIVPKLILLV-SHPDPSVSLLRIHCLITFLPA 267
           S I+P+L+  + SHP+PSV+   +  L  F  A
Sbjct: 365 SQILPELLYYINSHPNPSVASTAVKALGDFASA 397


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 28/109 (25%), Positives = 52/109 (47%)
 Frame = +2

Query: 305 EKPTDQDDSRAKSILVQCLSDKYIYIVKNANTTKEMLTSLEAIFERKTVCNKFYLKRKLI 484
           E  T Q  + +KS L + ++   + I+ N N  K+ +  L  +++       + LK+K  
Sbjct: 225 ENSTTQCSATSKSELKEDIASDQL-ILNNLNLIKQNV-GLRHLWD-------YILKKKKS 275

Query: 485 TMCYDDESNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYD 631
            +C++  ++L   F  FEG + E      ++    ++C  LSS   IYD
Sbjct: 276 VVCHNGMADLVYLFSLFEGKVPE------TILEFSELC--LSSFKSIYD 316


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 467 NKIYYRLFFVQIWPPMTLAFLLSYSHFLRCKYICRSDIVPKLI 339
           N I+Y      I       +LL+YSHFL   Y    D++ ++I
Sbjct: 20  NSIFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLDRVI 62


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 690 TNSMFSCFSEPIVSIDVIN*SYIFGKEDSR 601
           T+S+ SC  + +VSID     +I G+E  +
Sbjct: 420 TDSLTSCMGQSVVSIDKKTCMFIGGRESPK 449


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 488 LL*VSVLNKIYYRLFFVQI-WPPMTLAFLLSYSHFL 384
           +L V+ L K  Y+  F Q  W  MTL  ++  SHF+
Sbjct: 162 VLFVASLKKGNYKFQFSQFCWTHMTLLLVVGQSHFM 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,069
Number of Sequences: 5004
Number of extensions: 51811
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)