Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5l07
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590... 54 1e-07
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073 40 0.003
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 35 0.019
06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109 36 0.026
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 35 0.061
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 33 0.32
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 30 1.7
08_01_0465 + 4099721-4100556,4101505-4103614 29 4.0
11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525 28 7.0
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 7.0
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 28 9.2
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 28 9.2
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412 28 9.2
>06_01_0789 -
5901888-5902940,5903685-5903824,5904606-5904665,
5904794-5904854
Length = 437
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/107 (27%), Positives = 60/107 (56%)
Frame = +2
Query: 383 VKNANTTKEMLTSLEAIFERKTVCNKFYLKRKLITMCYDDESNLQQFFLKFEGILSELAA 562
V + + KE+ L ++ K++ +K YLK++L + +ES+L+ F ++ +L+
Sbjct: 88 VMDEKSPKEIWDKLANLYMSKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSK 147
Query: 563 INVSVEVEDQICYLLSSLPKIYDQLITSIETMGSEKQLNIEFVKARL 703
++V ++ ED+ LL SLP Y+ ++T++ T G + E + + L
Sbjct: 148 LDVKLDDEDKAIILLCSLPPSYEHVVTTL-TYGKDTVKTEEIISSLL 193
>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
Length = 900
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +2
Query: 494 YDDESNLQQFFLKFEGILSELAAINVSVEVEDQICY--LLSSLPKIYDQLITSIETMGSE 667
YDD++N + F+K G L EL + +++ D LL SL + Q I S+E +G+
Sbjct: 640 YDDKANGMRQFVKALGRLGELRVLQTQIDILDDSMEKDLLESLDNL--QKIRSLEILGAS 697
Query: 668 KQLNIEFVK 694
+ LN+E+ +
Sbjct: 698 RGLNVEWTR 706
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 34.7 bits (76), Expect(2) = 0.019
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 482 ITMCYDDE--SNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSIET 655
I +C D+ ++L F ++++ ++V V+ ED+ LL SLP+ Y+ ++T++ T
Sbjct: 398 IRLCLSDQEGADLTAHVNVFNQLVTDFMKMDVEVDDEDKAIVLLCSLPESYEHVVTTL-T 456
Query: 656 MGSEKQLNIEFVKARLLDMETXLKMDRNSXG 748
G +K + + + + LL + +M +N G
Sbjct: 457 YG-KKTIKTKDITSALLARD---QMRKNKEG 483
Score = 21.0 bits (42), Expect(2) = 0.019
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Frame = +2
Query: 227 NSNFSHWKFRXXXXXXXXXXSNVFLKEKPTDQDDSRAKSILVQ-------CLSDK 370
+ NF W+ + S EKP +D K + +Q CLSD+
Sbjct: 351 SGNFGLWQTKVKDLLAQQGVSKALKGEKPAKMEDDDWKEMQLQAAATIRLCLSDQ 405
>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
Length = 353
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +2
Query: 530 KFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSIETMGSE 667
+F+ +++L ++V V+ ED+ LL SLP+ Y+ ++T++ T G E
Sbjct: 51 RFQSTVTDLVKMDVEVDDEDKAIVLLCSLPESYEHVVTTL-TYGKE 95
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/50 (30%), Positives = 33/50 (66%)
Frame = +2
Query: 500 DESNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSI 649
+ES+L++ F ++ +L+ ++V ++ ED+ LL SLP Y+ ++T++
Sbjct: 135 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTL 184
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -1
Query: 428 PPMTLA---FLLSYSHFLRCKYICRSDIVPKLILLVSHPDPSVSLLRIH---CLITFL 273
PP T A ++L++ L+C IC SDI L L+S D +V L H C+I F+
Sbjct: 181 PPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRPRCIIEFI 238
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 476 SVLNKIYYRLFFVQIWPPMTLAFLLSYSHFLRCKYICRSDIVP-KLILLVSHPDPSVSLL 300
+ +N RL+FV WPP +L L++ HF I + ++ +++ L P P +
Sbjct: 388 TTINHQRMRLYFVPPWPPPSLVSSLAWVHFCIGALIFQRVVLSNEMVELEPWPPPHEASF 447
Query: 299 RI 294
RI
Sbjct: 448 RI 449
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 494 YDDESNLQQFFLKFEGILSELAAINVSVEV-EDQICY-LLSSLPKIYDQLITSIETMGSE 667
Y DE N + F+K G L EL + ++V +D I LL SL ++ I +E +G
Sbjct: 716 YSDEKNAARQFVKDLGRLRELRVLRTKIDVMDDSIARDLLESLDNLHK--IRYLEILGIL 773
Query: 668 KQLNIEFVK 694
+N+ + +
Sbjct: 774 WGMNVTWTR 782
>11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525
Length = 226
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 574 RRSRRPNLLSAVFFTKDIRSINYIN*DYGFRETT 675
+R P+L+S+VF K R INY+ Y + TT
Sbjct: 191 KRDLAPSLISSVFEEKGYRVINYMLVFYAAKSTT 224
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/117 (17%), Positives = 50/117 (42%)
Frame = +2
Query: 302 KEKPTDQDDSRAKSILVQCLSDKYIYIVKNANTTKEMLTSLEAIFERKTVCNKFYLKRKL 481
+E + D + L+ L+D + + + + K+M +LEA F ++ Y+ +
Sbjct: 20 EEAKFEASDCLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQF 79
Query: 482 ITMCYDDESNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSIE 652
D+ ++ + + + + EL N + + +++ LP + TS++
Sbjct: 80 YDYKMVDDRSIVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 136
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/117 (17%), Positives = 50/117 (42%)
Frame = +2
Query: 302 KEKPTDQDDSRAKSILVQCLSDKYIYIVKNANTTKEMLTSLEAIFERKTVCNKFYLKRKL 481
+E + D + L+ L+D + + + + K+M +LEA F ++ Y+ +
Sbjct: 165 EEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQF 224
Query: 482 ITMCYDDESNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSIE 652
D+ ++ + + + + EL N + + +++ LP + TS++
Sbjct: 225 YDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPSSWSDFATSLK 281
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 100 YHVKILYERISRLFLLSSVIFYSHDTILLSRE 5
+++ YE++ L +LSS FYS D +L E
Sbjct: 391 WNILTAYEKLPELVVLSSFSFYSSDILLYKYE 422
>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
Length = 255
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 548 SELAAINVSVEVEDQICYLLSSLPKIYDQLITSIETMGSEKQLNIEFVKARLL 706
++L ++V V+ ED+ LL SLP+ + ++T++ T G + + +++ + LL
Sbjct: 4 TDLVKMDVEVDDEDKAIVLLCSLPESNEHVVTTL-TYGKD-TIKTKYITSVLL 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,347
Number of Sequences: 37544
Number of extensions: 274627
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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