Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l07
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 369 NIFTS*KMRIRQKKC*RHWRPYLNEKQSVIN 461
           NI  + KMRI ++K    WRPY+ E +S +N
Sbjct: 520 NICDAVKMRISEEK----WRPYVLESESALN 546


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 287 SNVFLKEKPTDQDDSRAKSILVQCLSDKYIYIVKNANTTKEMLTSLEAIF 436
           S+ FL+   +D DD R  ++L QC+     Y   ++  T++    +EA F
Sbjct: 439 SDAFLQSYLSDNDDERMDAVLKQCILSGVAY--HHSGLTQDERKCVEAAF 486


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 368 KYIYIVKNANTTKEMLTSLEAIFERKTVCNKFYLKRKLITM---CYDDESNLQQFFLKFE 538
           K   I +N N + E   ++E +FE   V N+F      ++    C D ++NL  + L F 
Sbjct: 443 KVSVIAENENRSMEKTFNIEGLFELDHVENQFLTVENEVSFGFDCCDVDTNLCTYTLTFS 502

Query: 539 GILS 550
             +S
Sbjct: 503 DEMS 506


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical protein
            T21B10.3 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 541  NS*RISGNQRKRRSRRPNLLSAVFFTKDIRSINYIN*D 654
            N  + +GN RK+  R+P   S+ F+ +D  S+  +  D
Sbjct: 1106 NGNKFNGNSRKQPERKPRYTSSNFYEQDEDSLQLLKPD 1143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,914,049
Number of Sequences: 27780
Number of extensions: 278490
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)