Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5l05
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    28   1.3  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.7  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    26   5.0  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   5.0  
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.7  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.7  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   8.8  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 53   EKEFKNILRTHSEALICAEVYSQFV--GACTALDRLFTIIKYDWSNGKIILLKVPSDEVD 226
            E +  NIL  H+EA +  +  S F+  G   +   + +I K         L      E++
Sbjct: 1206 ESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTEIEIN 1265

Query: 227  SLRRFRDQSEPVYLFIFVWFNKLSMEKEL 313
            ++ R++ + + + L  FV  N  ++  EL
Sbjct: 1266 TVDRYQGRDKDIILISFVRSNSKNLVGEL 1294


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 237 LRNESTSSDGTF-SRIIFPLLQSYLMIVKSLSSAVQAPTNWLYTSAQI 97
           L + STS+   F   +IF L  +Y  +   LS+   +  NW+Y+  Q+
Sbjct: 503 LLDHSTSTISLFFGLLIFTLKSAYGYLTHRLSALYTSSENWVYSEQQL 550


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 434 KHAHPELYEQWD--LNGIIMIGREELNLMKEKAEDILYEGDAPINEASM 574
           KH HPE +  W   +N    I + +++  +++ +D L E    I + S+
Sbjct: 46  KHLHPETHVPWHRVINSRGTISKRDISAGEQRQKDRLEEEGVEIYQTSL 94


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 161 IIKYDWSNGKIILLKVPSDE-VDSLRRF 241
           I+K+D+ NGK I+ +   D+ +++LR F
Sbjct: 347 IVKFDFGNGKSIVHEFSKDDNIETLRAF 374


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 299 MEKELEVAAQHDRRVARQAARKRHRAELMVPHLER 403
           +EKE E+ A     V R   R RH A+L+   LE+
Sbjct: 31  IEKECEMYAVKIYNVERDIQRYRHEAQLLSKVLEK 65


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 VGACTALDRLFTIIKYDWSNGKIILLKV 208
           +GAC A+  LF I  Y W N     L+V
Sbjct: 368 IGACCAMSFLFYITFYCWDNYYYSFLQV 395


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 KELEVAAQHDRRVARQAARKRHRAELMVPHLERINFV 415
           ++L V  Q  R +  + +RKR +   +  HLERI+F+
Sbjct: 118 EKLVVKMQLRRDLRMRLSRKREKKTEIEKHLERISFL 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,513
Number of Sequences: 5004
Number of extensions: 58975
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)