Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5l05
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0235 - 22214700-22214914,22218782-22219045,22219258-22219294 33 0.19
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615... 33 0.25
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 30 1.7
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 30 2.3
04_04_0320 + 24364369-24366165 29 4.0
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 29 5.3
02_03_0154 + 15797731-15798798 28 7.0
12_02_0434 + 19025539-19026027,19026474-19027553 28 9.2
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 28 9.2
05_04_0170 + 18698824-18699097,18700212-18701254 28 9.2
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 28 9.2
>03_05_0235 - 22214700-22214914,22218782-22219045,22219258-22219294
Length = 171
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 251 SEPVYLFIFVWFNKLSMEKELEVAAQHDRRVARQAARKRHRAEL 382
++P++ WF + E+E++ Q ++R A QAA K HR +L
Sbjct: 98 AQPIWADADTWFERQQQEEEMQ-RLQAEQRAAMQAAEKLHREKL 140
>05_02_0053 -
6152204-6152329,6152817-6152981,6154698-6154883,
6155055-6155078,6155649-6155822
Length = 224
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 38 IEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSD 217
I+I + +EF + LR + L+ E Y + G+C AL + + N I+ LKV D
Sbjct: 90 IDIHSTQEFLDALRDAGDRLVIVEFYGTWCGSCRAL--FPRLCRTAVENPDILFLKVNFD 147
Query: 218 E 220
E
Sbjct: 148 E 148
>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +2
Query: 74 LRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSL-RRFRDQ 250
LR H + + ACTALD + + +D + K+ + D + L + F+D
Sbjct: 1192 LRAHGGLDVYLNLLEDDAWACTALDSIAVCLSHDNDHRKVEQALLKKDAIQKLVKFFQDC 1251
Query: 251 SEPVYLFIFVWFNK-LSMEKELEVAAQHDRRVARQAARKRHRAELMVPHLERINFVLFWP 427
E ++ I F K ++ + A + AR HR + L ++ V++
Sbjct: 1252 PEQYFVHILDAFLKIITKSSRINTAMATNGLTTLLIARLDHREAIARLTLLKLIKVVYEH 1311
Query: 428 H 430
H
Sbjct: 1312 H 1312
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 35 FIEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIK 169
F++ K EK ++ + T L+ + Y ++ G C + +L IIK
Sbjct: 17 FLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKLVNIIK 61
>04_04_0320 + 24364369-24366165
Length = 598
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 234 GDSAIKANQCTCLFLYGLTNYLWKKSLRSPPSMIVE 341
G S I+ N TC FL G N+L+ +R+ S++++
Sbjct: 556 GSSVIEVNGKTCEFLVGQQNHLYMDDVRAMLSILMK 591
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = +3
Query: 129 ALVLHSIDFSRSSSTIGAMEKLFC*RCRRMKWIHYGDSAIKANQ---CTCLFLYGLTNYL 299
A++L S+D +S +G+M + CR W G + Q C C +G L
Sbjct: 1428 AIILRSLDKFENSVCVGSMRIVLDAPCRHCVWYTLGLFGTRLKQLMSCRCGEWFGEEYIL 1487
Query: 300 --WKKSLRSPPSMIVEWLDRLP 359
K SP S + D LP
Sbjct: 1488 LFHKLDASSPHSTKINCFDELP 1509
>02_03_0154 + 15797731-15798798
Length = 355
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 407 LFSLDVAPSVQLGVASGQPVEPLDDHAG 324
L LD PSV S QP+ P DD G
Sbjct: 214 LLDLDAEPSVPFANISNQPLPPPDDDGG 241
>12_02_0434 + 19025539-19026027,19026474-19027553
Length = 522
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 293 LSMEKELEVAAQHDRRVARQAARKRHRAELMVPHL 397
+SM + V AQH+++ Q AR+ ++PHL
Sbjct: 25 ISMIVQAAVTAQHNKKECEQLARRAFMIAELLPHL 59
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 431 CKHAHPELYEQWDLNGIIMIGREELNLMKEKAEDILYEGDAPINEASMQML 583
CK HP + +WDL+ + I R + A L G + I +SM ML
Sbjct: 386 CKVYHPGMEAEWDLHA-VPIARGGAPIAAAAAGSALRPGGSGILNSSMGML 435
>05_04_0170 + 18698824-18699097,18700212-18701254
Length = 438
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 546 ETRRSMRRQCRCLYQAQPWLFAFGYWTPISILFLWF-VKFYMK----TSSSITMILQLNH 710
E R M + R + + W+ A G+W LF W V F++K ++S ILQ +
Sbjct: 2 EKERKMEGERR-VEATRRWVIAVGFWVQGFRLFPWLGVNFFLKDGMGVAASSLQILQASA 60
Query: 711 SEPLL 725
+ P++
Sbjct: 61 NLPMV 65
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 627 PISILFLWFVKFYMKTSSSITMI 695
P+ +L LWF K+Y+ TS +T +
Sbjct: 1112 PLLMLNLWFRKYYISTSRELTRL 1134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,633
Number of Sequences: 37544
Number of extensions: 367705
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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