Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5l01
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 205 2e-53
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 186 2e-47
03_06_0588 - 34924061-34924644,34924662-34925058 29 2.8
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 2.8
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 4.9
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 28 8.5
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 205 bits (501), Expect = 2e-53
Identities = 97/186 (52%), Positives = 133/186 (71%), Gaps = 7/186 (3%)
Frame = +3
Query: 156 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 335
+TLR+L+A+D HLG+ME D +R DSF AFEE+ SLA Q VD +LLGGDLF + KPS +
Sbjct: 27 NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRS 86
Query: 336 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR---TVNYEDPNLNISYPILSIHGNHDD 506
+ K EI+R+YCL D+PV +++SDQ NF VNYEDPN N+ P+ +IHGNHDD
Sbjct: 87 TLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDD 146
Query: 507 PVGQGSVSSLDILSITGLVNYFGKW----TDYTHVRISPVLLQKGLTRLALYGLSHLKDQ 674
P G ++S++DILS LVNYFGK + + + PVL++KG T +ALYGL +++D+
Sbjct: 147 PAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDE 206
Query: 675 RLSRLF 692
RL+R+F
Sbjct: 207 RLNRMF 212
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 186 bits (452), Expect = 2e-47
Identities = 90/193 (46%), Positives = 128/193 (66%), Gaps = 9/193 (4%)
Frame = +3
Query: 138 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 311
++W ++ LRIL+A+D HLG++E D +R DSF FEE+ SLAV VD ILLGG+LF
Sbjct: 6 ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65
Query: 312 DQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYPIL 482
+ KPS++ + K EIIR YCL D V +++SDQ ++N VN+EDPN NI P+
Sbjct: 66 HENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVF 125
Query: 483 SIHGNHDDPVGQGSVSSLDILSITGLVNYFGK----WTDYTHVRISPVLLQKGLTRLALY 650
++HG HD P G +S+ DILS VNYFGK +D + + PV ++KG T +ALY
Sbjct: 126 TVHGTHDGPAGVDGLSATDILSACNFVNYFGKVDPGSSDVDQISVCPVFIKKGATSVALY 185
Query: 651 GLSHLKDQRLSRL 689
GL +++D++LSR+
Sbjct: 186 GLGNIRDEKLSRM 198
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 126 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 281
END AW PD + A + L F + V S IA +V L +CDV
Sbjct: 52 ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1
Query: 412 SDSNSILTGLSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSKAIK 233
S S++ L G+SPR+ L + NI TE +R+ P S+ S T R S A
Sbjct: 552 STSSASLRGMSPRRRLASDGISKNITFTEK---DDRTMPSSVASQEISTIRRLPSDGADS 608
Query: 232 LS 227
+S
Sbjct: 609 IS 610
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 357 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 503
+ R+ G K ++ + D NFS + ++DP L + ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 553 VIERISRELTLPWPTGSS*LPCIERIG*EIFKLGSS*LTVLE 428
VIE + ++ P+GSS I +G FKLGS LT+L+
Sbjct: 133 VIEEMKLKVVYTVPSGSSDDSGITSLGSRSFKLGSDDLTMLK 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,289
Number of Sequences: 37544
Number of extensions: 342851
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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