Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k23
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1442 + 33628102-33628246,33628352-33628494,33628618-336288...    31   0.82 
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    29   3.3  
06_03_0857 + 25443251-25444429                                         28   5.8  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     28   7.6  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    28   7.6  
01_01_1118 + 8854388-8854525,8854558-8854833,8855197-8855337,885...    28   7.6  
01_01_0130 + 1182504-1182817,1183024-1183152,1183582-1183716,118...    28   7.6  

>04_04_1442 +
           33628102-33628246,33628352-33628494,33628618-33628831,
           33628925-33629159,33629285-33629372,33629526-33629885
          Length = 394

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 157 RNLMSLADCMVPVHPRISVPNIFKNKILDKILKDV-ATPFALW 282
           +NL+ L  C      R+ V    KNK LDKIL  V   PF  W
Sbjct: 135 KNLVRLVGCCSEGQQRLLVYEYMKNKSLDKILFGVDGAPFLNW 177


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 VATPFALWIIERPLCSMPKVYVNNSII 339
           +  PFA+WII+R   S+P VY+  S +
Sbjct: 462 IVLPFAMWIIKRIDISIPFVYLCKSCV 488


>06_03_0857 + 25443251-25444429
          Length = 392

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 365 SPVRLAPTTMILLLTYTFGILHKGRSMIQRANG 267
           +P+R A T ++  +   FGI H  RS++ RA G
Sbjct: 165 APLRPATTPVMRSMLVFFGIAHLVRSLVPRARG 197


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 573 HNRRNNVYVEVKRYAFEISIVVTSFSRDACVGGFQTF 463
           HN R++  ++++R ++   I V+   R   +GG QT+
Sbjct: 92  HNHRDHHTIQIRRSSYHDVIRVSDIQRFMDIGGVQTY 128


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 374 RNASPVRLAPTTMILLLTYTFGILHKGRSMIQRANGVATSFKI 246
           R  S   LA   ++  ++Y  GI H G      A GVA+S  I
Sbjct: 18  RRPSLFHLAAVAVLCTVSYLIGIWHHGGFSASPAGGVASSVSI 60


>01_01_1118 +
           8854388-8854525,8854558-8854833,8855197-8855337,
           8855364-8855474
          Length = 221

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 268 PFALWIIERPLCSMPKVYVNN--SIIVVGASRTGLAFLESLFMGPTAK 405
           PFA  ++  P   +P+++ NN  + +VVG     LA L+   MG + +
Sbjct: 76  PFAGRVVANPFSGLPEIHCNNQGAELVVGEVGVALASLDYGTMGASLR 123


>01_01_0130 +
           1182504-1182817,1183024-1183152,1183582-1183716,
           1184296-1184392,1184633-1184736,1184924-1184975,
           1185261-1185458
          Length = 342

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 391 GPTAKYLTFSNVT-LVSEHGLPTITECLKAADTCVPREGRYNDRYLKSV 534
           GP  + + + +V  LVS  G+  IT C +  D  V     +N R L ++
Sbjct: 256 GPVKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESFNQRKLSAM 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,504
Number of Sequences: 37544
Number of extensions: 362535
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)