Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k23
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical...    28   6.8  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical
           protein ZK180.7 protein.
          Length = 173

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 184 YNQPETSNCARDFYDS*SKRTSHCFHRNIQ*NCXXXXXXXXKSRSRTKTFYRRCYTSSIR 5
           Y     S   R +YD      SHC +R I  +C        K +S     + +  T+SIR
Sbjct: 52  YYAVNRSGTIRQYYDRFCVHESHCLYRGIDESCPTLNQLDHKMQSLFTKHHAKSNTNSIR 111

Query: 4   F 2
           F
Sbjct: 112 F 112


>U53180-3|AAA96284.1|  727|Caenorhabditis elegans Hypothetical
           protein D1014.5 protein.
          Length = 727

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 214 VLIYVDERVPYNQPETSNCARDFYDS*SKRTSHCFHRNIQ*NCXXXXXXXXKSRSRTKTF 35
           +L+Y D++      E+S   ++F +S  K T      NI+ N            SRTK  
Sbjct: 656 ILVYSDDQPQEAIAESSGLLKEFINSDDKWTPENLSENIEDNVPLRGELLENILSRTKLV 715

Query: 34  YR 29
           YR
Sbjct: 716 YR 717


>AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical
           protein T22D1.1 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 368 HSWKAYLWAQQPNT*HSVT 424
           H+W  Y W + PNT H+V+
Sbjct: 346 HTWIHYSWHEDPNTRHNVS 364


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 160 NLMSLADCMVPVHPRISVPNIFKNKILDKILKDVATP 270
           ++++L   ++  HP I +P I KNK L  I   +A P
Sbjct: 798 DVLALVTRLLAEHPAIMIPAIDKNKALGIIFNLLAAP 834


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 160 NLMSLADCMVPVHPRISVPNIFKNKILDKILKDVATP 270
           ++++L   ++  HP I +P I KNK L  I   +A P
Sbjct: 798 DVLALVTRLLAEHPAIMIPAIDKNKALGIIFNLLAAP 834


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,521
Number of Sequences: 27780
Number of extensions: 331919
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)