Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k22
(242 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 1.2
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 1.2
04_01_0229 - 2897484-2900402 27 1.6
01_05_0214 - 19362812-19363477 27 2.1
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 27 2.8
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 27 2.8
02_05_1082 - 33976038-33978035 26 4.9
02_05_0404 - 28700377-28701741,28701842-28702318 25 6.4
12_02_0674 - 21745321-21746223,21746229-21747608 25 8.5
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912... 25 8.5
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 25 8.5
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 25 8.5
03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988 25 8.5
01_05_0710 + 24492337-24493053 25 8.5
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 11 CRQIWTSETKPKIWSIPKGDIGS 79
C W+ ++ +IW+IP G GS
Sbjct: 283 CMSGWSGDSTARIWTIPDGPCGS 305
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 30 LKPNPRFGPFPKVTLAVVVGYFLGKLSY 113
+KPN +FGPFP+ +AV + L L Y
Sbjct: 123 IKPN-KFGPFPESLVAVYIAQVLEGLVY 149
>04_01_0229 - 2897484-2900402
Length = 972
Score = 27.5 bits (58), Expect = 1.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 65 LWEWTKSWVWFQMSI 21
+WEW K W FQM +
Sbjct: 249 VWEWEKRWTVFQMEV 263
>01_05_0214 - 19362812-19363477
Length = 221
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 141 PSASQHMPAGMTTSPRSSQPLLPMSPLGMD 52
P S P+ TSP +S LLP SPL D
Sbjct: 35 PPYSPAQPSPPPTSPPASPTLLPTSPLSDD 64
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 225 GSVLALKSLQSFHSSDLLVSALYSCRAMPSASQHMPAGMTTSPRSSQPLLPMSPL 61
G + L S + D + S +++ A PSA+ +PA + PR+S P+ PL
Sbjct: 4 GDTIPLHSSSAQSDMDEIESLIHA--APPSAAAVLPARPPSPPRASIPVSSSPPL 56
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 98 QEVANHYCQCHLWEWTKSWVWFQMSIFDGSVC 3
Q NH EWT +W FQ S+FD C
Sbjct: 271 QNRRNHLILPKALEWTLNWCIFQ-SMFDSKFC 301
>02_05_1082 - 33976038-33978035
Length = 665
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 65 GDIGSSGWLLLGEVVIPAGM 124
G GSSGW+++G V+P +
Sbjct: 210 GAAGSSGWMVVGFEVVPCSI 229
>02_05_0404 - 28700377-28701741,28701842-28702318
Length = 613
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 147 AMPSASQHMPAGMTTSPRSSQPLLPMSPLGMD 52
A + ++H+ G+ SPR ++PLL L D
Sbjct: 47 ARKAHARHVKLGLDRSPRHARPLLAACALAAD 78
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 156 SCRAMPSASQHMPAGMTTSPRSSQPLLPMSP 64
+C A+PS+S+ P +T +P + P +SP
Sbjct: 401 TCSALPSSSKPAPKKITPTPPTLAPPPLISP 431
>06_03_0796 -
24690115-24690247,24690622-24690808,24691060-24691222,
24691503-24691688,24692005-24692174,24692648-24692774
Length = 321
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 240 LRTLKGSVLALKSLQS-FHSSDLLVSALYSCRAMPSASQHMPAGMTTSP 97
LR L+G+ L+ L++ D + SA+ C + + +P+G +T+P
Sbjct: 50 LRALQGAEERLQLLKADLLDYDSVASAVAGCEGVFHVASPVPSGRSTNP 98
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 115 WYDNFPKK*PTTTANVTFGNGPNLGFGFRCPYL 17
W D FPK P + G+ FG C +L
Sbjct: 338 WQDTFPKYKPRVFHRTSDGSTSGCPFGSSCHFL 370
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 8 RCRQIWTSETKPKIWSIPKGDIGSSGWL 91
RC +W PK W + K G S WL
Sbjct: 1379 RCFMMWQYPWSPKDWQLEKS--GPSPWL 1404
>03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988
Length = 124
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 120 PAGMTTSPRSSQPLLPMSPLG 58
PAG SPRS+ P SP G
Sbjct: 73 PAGYPASPRSAASTPPASPAG 93
>01_05_0710 + 24492337-24493053
Length = 238
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 108 TTSPRSSQPLLPMSPLGMDQILGLV 34
TT+P S P P+SP +D + L+
Sbjct: 31 TTAPASRPPPYPLSPSDLDAVSALL 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,906,771
Number of Sequences: 37544
Number of extensions: 157933
Number of successful extensions: 537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -