Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k20
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    32   0.073
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    31   0.22 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.30 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.68 
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   4.8  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   6.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.4  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -1

Query: 567 YDILHLQSHNKTLNLVVSESIH-FVFYILTVCRTCYHRLYCDDQKLLTEIMMP-KSLLLT 394
           Y IL L++ +  + LV+++ I  F+F   T   +CY+ L   +Q +LT   +   +LL+ 
Sbjct: 251 YSILQLEASHPAMKLVITKEIERFIFAPSTSRTSCYYTLITLNQTVLTHKQVDVANLLIE 310

Query: 393 MY 388
           +Y
Sbjct: 311 IY 312


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
 Frame = +3

Query: 558 ECHKLDSGIFDLVIADPPWWNRYIRRLKNANEQLS--------YEMMYNEDIAAIP 701
           EC+KL++ ++DLV +     N  I+++ +A + L         YE +YN++  A+P
Sbjct: 671 ECNKLENRVYDLVRSSYEQRNFLIKKISHAWKALQTERKNLTCYEFLYNQERLALP 726


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
 Frame = +3

Query: 207 SYTLSAKLFSITSEVRTRKRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNIL 386
           S ++ +   S++S + +         LSI +S     +       P+SI   IS    IL
Sbjct: 566 SSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTIL 625

Query: 387 DTSSVRDFSASLFQSTIFD-HHSINGGSTSDIPLKCKIQNEYFLIPPNS 530
            + +    S  +  S+I     SI   S S IP+   +      + P+S
Sbjct: 626 SSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSS 674


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +3

Query: 102 KIMSLVIKQGNCCLIDHWEFIAKLYKD----VLFEENYQSYTLSAKL--FSITSEVRTRK 263
           K+ +L   Q +   I HW    K Y D    +  E  Y+S +    L  + +   V+  +
Sbjct: 11  KLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQQSR 70

Query: 264 RKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNI 383
            KK+ E +   +  +     +  A VP SIK +I   +++
Sbjct: 71  VKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDV 110


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 279 EELSIETSKIKRMYEEFIAKVPNSIKERISQKY 377
           EE + + + I+  YE+ IAKVP  +++   ++Y
Sbjct: 329 EESAGDINTIRETYEKAIAKVPEVVEKNAWRRY 361


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 639 KNANEQLSYEMMYNEDIAAIPLSNLLSSNCL 731
           +N  ++L+Y+MMY++ + ++P  + L  N L
Sbjct: 44  ENLEKKLAYQMMYSKLLKSLPKLSSLEENKL 74


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
 Frame = +3

Query: 498 QNEYFLIPPNSRFYYGSVNEECHKLDSGIFD------LVIADPPWWNRYIRR--LKNANE 653
           ++  + IP  S F  G V +    L   I         +I DPPW N+ + R  +   N 
Sbjct: 193 RDSIYYIPARSSFIMGDVEKTAQILLEAIDGHLEKPKCIIIDPPWPNKSVARSSVYKVNR 252

Query: 654 QLSY 665
            L Y
Sbjct: 253 NLGY 256


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 643 FFNLLIYLFHHGGSAITRS 587
           FF+LLI LF HG S+ + S
Sbjct: 16  FFSLLILLFAHGASSSSSS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,696
Number of Sequences: 5004
Number of extensions: 62653
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)