Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k20
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 32 0.54
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 32 0.54
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 30 2.2
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.8
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 29 3.8
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 28 6.6
02_05_0013 + 24975298-24975352,24975533-24976494,24976621-249771... 28 6.6
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 258 RKRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNILDTSSVRDFSASLFQSTI 437
R+ K EE ++ K K +Y+E AK+ + ++ER+ Q N +S + S + Q ++
Sbjct: 375 RRSKGECEETNVAQLK-KEIYDELAAKIDSEVEERLQQALNQRSVASPVEPSPNTIQDSV 433
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 234 SITSEVRTRKRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNILDTSSVRDFS 413
++ S+V +KRK++ E + E K+K+ Y+ + K + ++ ++ I +
Sbjct: 2334 NVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQKEAELDTIYRKVFINQSL 2393
Query: 414 ASLFQSTIFDHHSINGGST 470
A F+ + GGST
Sbjct: 2394 AENFRRKFLPLSAAQGGST 2412
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.9 bits (64), Expect = 2.2
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Frame = +3
Query: 111 SLVIKQGNCCLIDHW--EFIAKLYKDVLFEENYQSYTLSAKLFSITS-EVRTRKRKKVYE 281
S +++ C+ ++W + ++K +D+ E+NYQ + A + S+ S E R+ RK +
Sbjct: 83 SSAVERIKFCVQENWPEDILSKALEDICLEKNYQEKCVLALVHSLQSYEDRSPHRKS--K 140
Query: 282 ELSIETSKIKRMYEEFIAKV-----PNSIKERISQKYNILDTSSVRDFSASLFQSTIFDH 446
L +S + R Y+ ++ V P S E I Y + A L S FD+
Sbjct: 141 ALDCSSSLMPR-YQLMVSSVLLTTLPLSFPE-ILNVYFKKKLEELNIMMAGLDGSDPFDN 198
Query: 447 HSI 455
H +
Sbjct: 199 HDL 201
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 585 FDLVIADPPWWNRYIRRLKNANEQLSY---EMMYNEDIAAI 698
FD+++ DPP W Y+ R + + Y E + N I AI
Sbjct: 521 FDVILVDPP-WEEYVHRAPGITDHIEYWNGEEIMNLKIEAI 560
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 585 FDLVIADPPWWNRYIRRLKNANEQLSY---EMMYNEDIAAI 698
FD+++ DPP W Y+ R + + Y E + N I AI
Sbjct: 518 FDVILVDPP-WEEYVHRAPGITDHIEYWNAEEIMNLKIEAI 557
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 585 FDLVIADPPWWNRYIRRLKNANEQLSY 665
FD+++ DPP W Y+ R + + Y
Sbjct: 725 FDVILIDPP-WEEYVHRAPGITDHIEY 750
>02_05_0013 +
24975298-24975352,24975533-24976494,24976621-24977136,
24977250-24977442,24978108-24978439
Length = 685
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 261 KRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNILDTSSVRDFSASLFQSTIF 440
KR+++ IE ++ KR Y+E I K+ +R + D R A FQ+
Sbjct: 511 KRQQIILAREIEMAETKRKYDELIHKLEMETSQRKKGIQILADKVYKRQTLAEGFQTMFV 570
Query: 441 DHHS 452
H S
Sbjct: 571 SHGS 574
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,369
Number of Sequences: 37544
Number of extensions: 315952
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -