Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k19
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.80
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 1.8
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.2
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 4.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 4.2
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 5.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 7.4
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 7.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.8
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 136 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 282
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 506 KKLNKKYFHQHVQYDRRISFTNTCSKFRMVSISSLAEK 393
KK N+ Y + +QY I N C KF ++ L ++
Sbjct: 718 KKANELYIFEDMQYMSDIELHNLCCKFPSINSFQLKDE 755
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 357 RHRTARQQQAASNEYIEYDFA 295
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 137 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 316
+ S + S+ T SAT S A ++ +S+ NSTT A A S S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246
Query: 317 S 319
S
Sbjct: 247 S 247
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 410 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 309
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 462 PTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEYDFAIAS 286
PTH F +YL S LI + V + + H + + R + S +Y E+ I
Sbjct: 152 PTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEHGLFILD 211
Query: 285 VV 280
++
Sbjct: 212 LI 213
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 458 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 306
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 103 SQKVEKPVLSGQRIKTRKRDE 165
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 104 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 223
V+R K + +RPE EM + + LWY WSG
Sbjct: 43 VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 134 VNGSRPEKEMRKRSMTRTVS 193
+N S+ EK++RKR+ R +S
Sbjct: 754 LNASKGEKDLRKRTQERLIS 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,806
Number of Sequences: 5004
Number of extensions: 48021
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -