Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k19
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 71 8e-13
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.1
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 1.4
01_06_1226 - 35518981-35519295,35519876-35520745 30 1.4
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 29 2.5
06_01_0707 + 5136210-5136584 29 3.3
09_04_0258 - 16175258-16176069,16176111-16176414 28 4.3
12_02_0749 - 22758317-22760407 28 5.7
09_04_0350 + 16899076-16900164 28 5.7
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919 28 5.7
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 28 5.7
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 27 7.5
12_02_1081 + 25914180-25914371,25918121-25919104 27 10.0
08_01_1019 - 10290820-10291393,10293978-10294348 27 10.0
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 27 10.0
03_02_0390 + 8056006-8057502 27 10.0
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 27 10.0
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 70.5 bits (165), Expect = 8e-13
Identities = 39/90 (43%), Positives = 52/90 (57%)
Frame = +1
Query: 76 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 255
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKS 115
Query: 256 LDSAGSKLDYRRYGEVIFDVLIAGGLLLPG 345
++S S L++ RYG+ F+V+ GG PG
Sbjct: 116 IES--SDLNFSRYGDTFFEVVFIGGRTQPG 143
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 365 PSIDTEPPGSSRPPA 321
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 136 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE 300
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 457 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 326
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 163 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE-VIFD 312
EK+K DP GF D V A G ++ + S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>06_01_0707 + 5136210-5136584
Length = 124
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 286 GSRVLIRPSLGTCRLRRDRHRPAP 215
G RVL+ PS GT LRR RP P
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPP 92
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 298 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 185
R G+ +P G RLRR RH A P +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 400 RRRCRCWSWAIRRPSTPNR 344
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 5.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 433 RNFAWCPYPHWRRRCRCWSW 374
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
Length = 130
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 282 LPTLWRSHIRCTHCWRPAAAGRF 350
LP + + C +C RP AAGRF
Sbjct: 89 LPAVAADLVDCMNCGRPVAAGRF 111
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 426 SHGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVVE 277
+HG+H+++ DA GR A + R A + S E+ + D A+ VE
Sbjct: 69 THGLHVVLTSRDA--ARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVE 116
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 232 RHRPAPDPVPERRGNRS 182
R RPAPDPV RG+R+
Sbjct: 12 RRRPAPDPVAVLRGHRA 28
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -3
Query: 265 PSLGTCRLRR-DRHRP-APDPVP 203
P LG CRLRR + HRP P+ VP
Sbjct: 11 PPLGPCRLRRQELHRPRRPNHVP 33
>08_01_1019 - 10290820-10291393,10293978-10294348
Length = 314
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 282 LPTLWRSHIRCTHCWRPAAAGR 347
L +WR + C WR AAA R
Sbjct: 37 LEDVWRGAMACCRAWRDAAASR 58
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 292 SVGSRVLIRPSLGTCRLRRDRHRPAPDPVPE-RRGNRSGHTSLS 164
S GSR+ RP G + + P P P PE R H S+S
Sbjct: 120 SGGSRLARRPKKGILKAQSSSSAPPPPPSPEVELLRRRRHVSIS 163
>03_02_0390 + 8056006-8057502
Length = 498
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 WRPAAAGRFGV-DGRRIAQDQHLHLLRQ*GYGHHAK 428
W AA R DG + + HLHL+R+ G+GH A+
Sbjct: 83 WALLAAARAATPDG--VLRLAHLHLIRELGHGHLAR 116
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 112 PSDSYNILILTGYVGAFYSFCEFSRTAPVQKRKKR 8
PS+S+ LI GY G F S +R V ++KK+
Sbjct: 349 PSNSFANLIYVGYPGDFDSAFTTTRKRRVDRKKKQ 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,466,991
Number of Sequences: 37544
Number of extensions: 365099
Number of successful extensions: 1381
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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