Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k19
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   0.96 
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   6.8  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   6.8  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    27   6.8  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    27   9.0  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    27   9.0  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    27   9.0  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 475 MYNTTDASVSRIPVRNFAWCPYPHWRRRCRCWSWA 371
           M+ TTD   + +  R     P  HWR RC+C+S A
Sbjct: 53  MFKTTDQVPASVSSRLDRSAP-SHWRARCKCFSMA 86


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 422 MVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP 294
           +VS SS      V+    +PS    P  +S  P  STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 134 VNGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAK 301
           V+ S  +KEMR   + R+ + T    V   P+   + PTS  T P + ++TD+  K
Sbjct: 324 VSDSDDDKEMRYHPLFRSNTLT---HVHFNPLGTISTPTSIATTPQRCTSTDSKQK 376


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 179 TRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTT 286
           T T +AT        P   +TQPT+T T P   +TT
Sbjct: 212 TTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTT 247


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 179 TRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTT 286
           T T +AT        P   +TQPT+T T P   +TT
Sbjct: 208 TTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTT 243


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 179 TRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTT 286
           T T +AT        P   +TQPT+T T P   +TT
Sbjct: 151 TTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTT 186


>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 217
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 217
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 493 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 526


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 217
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 217
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 485 FHQHVQYDRRISFTNTCSKFRMVSISSLAEK 393
           F+Q  + D+RI F N  SK+ ++ ++ LA K
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATK 198


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 485 FHQHVQYDRRISFTNTCSKFRMVSISSLAEK 393
           F+Q  + D+RI F N  SK+ ++ ++ LA K
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATK 198


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 485 FHQHVQYDRRISFTNTCSKFRMVSISSLAEK 393
           F+Q  + D+RI F N  SK+ ++ ++ LA K
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATK 198


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 365 PSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDP 267
           P+I T PP +  PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,686
Number of Sequences: 27780
Number of extensions: 279066
Number of successful extensions: 1056
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)